Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00075 CTGGATACCCCTAGAAATAGTATGAAGCTGCAGATAGATACTTCCCAGAGTTATTATGCAGTTGGAGAAGTCCAATACTCTTATCAAGTAGAAGTAGAACATTCTGACAAGGATTTTTATCCAAATGAGCTTTCGATGAAGAAGTTAATTGACAAGGAAACGTCGAAACATTCAAATCCCAGAAAAAATGCACCAAACATTGTAGCTCGGCTGATGGGAATGGATATAATGCCATCAGATATGAAACCTGAAACTCAGTTGAGAGAGAAAACAAAGCAAGGTAATTTTTCAAGCAAAGAAAGGATTCAAAGGTGCCCAGATGGTCCTATACTTTCCCACTTAGATTCTTCCATGCAAATGGGATCATCTTACCATAATTGGGAGACAGAATCCAATCAATGGAGTAGAAGCCATAAGATGGCAAACCCAAGACGTCGAGAACATCCTCAAGAAGAGGAGCTTCAGAAGTTCAAGAAAGAATTTGAAGCATATCAGGCAGCAAGGATTAGGGAATGTTCTAGGGTTCTTGAACTTGGTAGTAGTAACAAACAGTTACTTGCTCAGGAAGACCTCGCCAAGGTACAGATGGCAGTCACTGCAAACTCCAGGAGACTAGCAACTCAGAAACCTGTAAAACCAAACAATTCCATACTGGAAATAAGGTCGCTTGGACAATCTGATTTGAAAGATCATGGTACTAAGATGGATTTTTCTCCAGTTGAAAACAAGAAATCATTTTCTATGAGAAACAAATCCAACCATGTACATATTGACCCGTCCTTCTTGACAAGTTCTGATCAAAAAATGAAATCTTCATCTCCCTCAAGGATTGTTATCTTGAAGCCTGGTCCTGATAGGATATGCCACCTCAAAGAAAGTTGTGTTAGCTCCTCAGGGACTTTAGGTCAAAGAACTAACATAGAGGATTTTCTAGAGGAGGTGAAGGAGCGATTGAAGTGGGAATTGCATGGAAAAACAAATCAAATAGTTTCTGGAGTTCGGGGTAGTGGAATTGAGACCCCGTATAGTGAAAAGCCATCTGTTCCAAAGCATATTGCTAGGCATTTAGAAAAACATGCCAAAGAAGGTGTGAATAAAGAGATTGGAATAAATTTGATCCGAGATGATGAAAGTGTTGCAAAGGAAGTCAAAGATATAGTGAGAGGCGGACGAGATTCGAACTATTTGGAAATTGAAAGAGATGAAGAAGAAATGCAAACAAGATCTTTCAGGCATGGAGCAAGAGAAAATGAAGTGGTTCACAGAGAATTGTCCCCTAGGAACCTGCATGAAGATAACGAAAATGTATCAATGAAGATGAAAGTTCCAAAGAAAGAAAAATTTAATCTCAAAGAAAAAGTTTCGAATTTCAGATATAATTTCACTCTCAGAAGGAAACTGTTTGGTAGAAAGACACAGTCAATGGTGGAATCACCGAAGACAGAAGTCAGTCCTTTGAAGGACCTGATGAGTGGACCAACTGTTCTTTTGAACACTAGGGAGAGGCAGACAAGGGAGAACTCTACTGAGGTGCCCCCCAGTCCTGCTTCAGTGTGCAGCAGTACTGCAGATGAATTCTGGGGCCCCACTGATCATCTCAGCCCAATTTCAACATCAGATGTTACTCCGGGAGATGATATTGCTGTGCCTCAAGTTTTTCGTGAGATAAGCTCTAATTTAAATGCTACTGTTGTAATTTATTGCTCTCTTATTTTATTTCCAGGAATCAGGCTTGGTAGTTTATATTGTGAGCCATTAATGGCTTCTTCTGGCCCCAAAATCACTTCAAGACAGCGTTGGAATCCAACCCCTGTTCAGCTTCAGATTCTTGAGCGTATATTTGATCAGGGAAATGGAACTCCAAGCAAGCAGAAAATAAAAGAGTTAACATCCGAATTGAGCCAGCATGGCCAAATTTCTGAAACAAATGTCTACAATTGGTTCCAGAACAGGCGAGCTCGATCAAAGAGGAAAAAACAAACTTCAGCCCCAGTTAATGCTGAATCAGAAGCCGAGACTGATAACGAGTCGCCTAATGAAAACGAGACAGAACAAATGGATTTTCAATCCAAACAGAACAACTCCACATCCATGGCTGATGATCTGAGATTCCAGATCACTGAGCGCGGCTCTGATTTTCCTTTTTTAGATGGAAGAAGCAACAAAGCAGAGATTTTGTTTCCCTCCAATGGAACCATGAAAAATGGGAGAAATTTGGGTCAAATGTCGTTTTACGAGGGTATGTTCAAGTGA 2253 40.35 LDTPRNSMKLQIDTSQSYYAVGEVQYSYQVEVEHSDKDFYPNELSMKKLIDKETSKHSNPRKNAPNIVARLMGMDIMPSDMKPETQLREKTKQGNFSSKERIQRCPDGPILSHLDSSMQMGSSYHNWETESNQWSRSHKMANPRRREHPQEEELQKFKKEFEAYQAARIRECSRVLELGSSNKQLLAQEDLAKVQMAVTANSRRLATQKPVKPNNSILEIRSLGQSDLKDHGTKMDFSPVENKKSFSMRNKSNHVHIDPSFLTSSDQKMKSSSPSRIVILKPGPDRICHLKESCVSSSGTLGQRTNIEDFLEEVKERLKWELHGKTNQIVSGVRGSGIETPYSEKPSVPKHIARHLEKHAKEGVNKEIGINLIRDDESVAKEVKDIVRGGRDSNYLEIERDEEEMQTRSFRHGARENEVVHRELSPRNLHEDNENVSMKMKVPKKEKFNLKEKVSNFRYNFTLRRKLFGRKTQSMVESPKTEVSPLKDLMSGPTVLLNTRERQTRENSTEVPPSPASVCSSTADEFWGPTDHLSPISTSDVTPGDDIAVPQVFREISSNLNATVVIYCSLILFPGIRLGSLYCEPLMASSGPKITSRQRWNPTPVQLQILERIFDQGNGTPSKQKIKELTSELSQHGQISETNVYNWFQNRRARSKRKKQTSAPVNAESEAETDNESPNENETEQMDFQSKQNNSTSMADDLRFQITERGSDFPFLDGRSNKAEILFPSNGTMKNGRNLGQMSFYEGMFK 750
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1177395 1185428 + Bma022687.1 Bma06g00075 83577

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00075 750 MobiDBLite consensus disorder prediction 501 521 - -
Bma06g00075 750 MobiDBLite consensus disorder prediction 653 697 - -
Bma06g00075 750 MobiDBLite consensus disorder prediction 82 97 - -
Bma06g00075 750 Gene3D - 599 663 - -
Bma06g00075 750 MobiDBLite consensus disorder prediction 682 697 - -
Bma06g00075 750 PANTHER RB1-INDUCIBLE COILED-COIL PROTEIN 1 375 - -
Bma06g00075 750 PANTHER RB1-INDUCIBLE COILED-COIL PROTEIN 430 561 - -
Bma06g00075 750 PANTHER RB1-INDUCIBLE COILED-COIL PROTEIN 379 429 - -
Bma06g00075 750 MobiDBLite consensus disorder prediction 82 117 - -
Bma06g00075 750 PANTHER RB1-INDUCIBLE COILED-COIL PROTEIN 1 375 - -
Bma06g00075 750 PANTHER RB1-INDUCIBLE COILED-COIL PROTEIN 430 561 - -
Bma06g00075 750 MobiDBLite consensus disorder prediction 129 152 - -
Bma06g00075 750 SMART HOX_1 595 662 IPR001356 GO:0003677
Bma06g00075 750 ProSiteProfiles 'Homeobox' domain profile. 593 658 IPR001356 GO:0003677
Bma06g00075 750 PANTHER RB1-INDUCIBLE COILED-COIL PROTEIN 379 429 - -
Bma06g00075 750 CDD homeodomain 597 659 IPR001356 GO:0003677
Bma06g00075 750 SUPERFAMILY Homeodomain-like 595 660 IPR009057 -
Bma06g00075 750 Pfam DUF761-associated sequence motif 64 79 IPR032795 -
Bma06g00075 750 Pfam Homeodomain 597 657 IPR001356 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00075 - - - qsu:112005480 515.383
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00291 Bma-Chr4:2338187 Bma06g00075 Bma-Chr6:1177395 5.72E-44 dispersed
Bma06g00075 Bma-Chr6:1177395 Bma10g00996 Bma-Chr10:23492870 4.41E-41 dispersed
Bma01g02412 Bma-Chr1:81704465 Bma06g00075 Bma-Chr6:1177395 1.31E-56 wgd
Bma03g00929 Bma-Chr3:9648699 Bma06g00075 Bma-Chr6:1177395 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1199 . Blo16g00107 . . . Bpe13g00389 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma06g00075 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008231 2 4 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 1 1 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57410 PF00046 Homeodomain 7.30E-18 CL0123 Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g00075 Bma_Chr06 FPKM 10.347911 10.971604 15.788306 14.427281 10.108184 10.859348 10.977449 8.172621 8.886809 9.527976