Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00077 ATGGGGAATTGCTTCGGAACTTCCGATCACGATCCCGATTTGAACCGAAAATCTCTTTCTACTCCGGGACAATCGAGCGATTACAGCAAAAGCTTAGGGTTTTCAGCGACGAGCAGTAGCGCCGGAATAAGCCAATTTTCCGATGCGGCGAGTGTACCCATGGAAGGCTCTCATTCGACTGGACAAATCTTAGTCAGTTCCAACTTGAAGGTGTTTACCTTTTCTGAGCTGAAATTGGCGACGAAGAACTTCAAATCCGATCACTTTCTCGGCGAGGGAGGATTTGGGAAAGTTTACAAAGGGTGGGTGGATGAAAAAACGCTTGCTCCCTCCAAGCCCGGTACCGGAATGATGGTTGCCATCAAGAAACTGAACTCAGAAAGCGTCCAAGGTTTTCAAGAATGGCAGTCGGAAGTGAGCTTTCTAGGAAGGCTTTCGCATCCCAACCTTGTCAAGTTATTGGGATATTGTTTGGAGGATACAGAGATGCTGCTTGTGTATGAGTTCATGGCCAAGGGTAGCTTGGAGAATCATCTCTTTAGAAGGAGTCCCTCGATCGAGCCGCTTTCGTGGGAAAAACGGCTGAAAATAGCCATTGGTGCAGCTAAGGGCCTGGCTTTCTTGCATTCTTCAGAAAAACATGTTATATACAGAGATTTCAAGGCTTCCAACATACTTCTCGATGGGAACTACAGTGCCAAGATCTCGGATTTCGGATTGGCCAAATTGGGTCCTTTAGGCGAAGCCTCCCACTTGACGACCCAAATAATGGGGACGTATGGCTATGCCGCCCCGGAATATATTAGCACAGGGCATTTGTACGTGAAGAGCGACGTCTACGGTTTTGGCGTTGTGTTGCTTGAATTGTTGACGGGCTTACGAGCTCTCGATTCGAAAAGGGAGAGCGAGGAACGAAATCTAGTCGATTGGCTTAAGCCGGCGTTGATAAGAAGAAAAAGGATCAAAACCATTATGGATCAAAGGATAGAAGGTCAGTACTCCACCAAAGCAGCTTCACTGGCTGCTGATCTTACTTTAAAATGTCTCGAATCCGATCCTAAAAATCGACCCTCCATGAAAGACGTCCTCGAAGCTTTGGAACAGATCGAAGCAATCAAGGAAAAACCAAAACCAGCCAGACTTCGCAAAACATCGAGTTCTAATGCTGTTAAACCCAGGCTCCACCAACATAATTCCTCCCCGTTCTCGAATTCTTCGCAACCCGAATAA 1230 46.83 MGNCFGTSDHDPDLNRKSLSTPGQSSDYSKSLGFSATSSSAGISQFSDAASVPMEGSHSTGQILVSSNLKVFTFSELKLATKNFKSDHFLGEGGFGKVYKGWVDEKTLAPSKPGTGMMVAIKKLNSESVQGFQEWQSEVSFLGRLSHPNLVKLLGYCLEDTEMLLVYEFMAKGSLENHLFRRSPSIEPLSWEKRLKIAIGAAKGLAFLHSSEKHVIYRDFKASNILLDGNYSAKISDFGLAKLGPLGEASHLTTQIMGTYGYAAPEYISTGHLYVKSDVYGFGVVLLELLTGLRALDSKRESEERNLVDWLKPALIRRKRIKTIMDQRIEGQYSTKAASLAADLTLKCLESDPKNRPSMKDVLEALEQIEAIKEKPKPARLRKTSSSNAVKPRLHQHNSSPFSNSSQPE 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1192143 1194637 + Bma022689.1 Bma06g00077 83579

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00077 409 ProSiteProfiles Protein kinase domain profile. 84 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma06g00077 409 ProSitePatterns Protein kinases ATP-binding region signature. 90 123 IPR017441 GO:0005524
Bma06g00077 409 Gene3D Phosphorylase Kinase; domain 1 68 169 - -
Bma06g00077 409 SUPERFAMILY Protein kinase-like (PK-like) 62 368 IPR011009 -
Bma06g00077 409 MobiDBLite consensus disorder prediction 17 31 - -
Bma06g00077 409 CDD STKc_IRAK 90 369 - -
Bma06g00077 409 Pfam Protein tyrosine and serine/threonine kinase 87 366 IPR001245 GO:0004672|GO:0006468
Bma06g00077 409 ProSitePatterns Serine/Threonine protein kinases active-site signature. 215 227 IPR008271 GO:0004672|GO:0006468
Bma06g00077 409 MobiDBLite consensus disorder prediction 374 409 - -
Bma06g00077 409 PANTHER OS02G0670100 PROTEIN 18 387 - -
Bma06g00077 409 MobiDBLite consensus disorder prediction 382 409 - -
Bma06g00077 409 MobiDBLite consensus disorder prediction 1 31 - -
Bma06g00077 409 PANTHER OS01G0588500 PROTEIN-RELATED 18 387 - -
Bma06g00077 409 Gene3D Transferase(Phosphotransferase) domain 1 170 390 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00077 - - - pvy:116127793 561.992
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma03g00931 Bma06g00077 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00931 Bma-Chr3:9723545 Bma06g00077 Bma-Chr6:1192143 0 dispersed
Bma06g00077 Bma-Chr6:1192143 Bma08g00718 Bma-Chr8:43020846 3.94E-156 dispersed
Bma06g00077 Bma-Chr6:1192143 Bma03g00130 Bma-Chr3:1002493 1.94E-147 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1189 Blo04g00863 . . . Bpe15g00497 Bpe13g00391 . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0892 . Cone6ag1697 Cone9ag1621 . . . . . . . . . . Bma03g00931 Bma06g00077 . . . Cma16g01278 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003844 1 1 1 2 2 0 2 0 0 2 1 0 2 2 0 2 0 0 2 0 2 0 0 0 0 1 0 0 0 1 24
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66522 PF07714 PK_Tyr_Ser-Thr 2.80E-48 CL0016 Bma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g00077 Bma_Chr06 FPKM 1.621701 1.224753 3.270677 2.889564 4.053345 3.536098 3.492177 2.354625 1.983786 2.479974