Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00078 AGTGGATTTGGAGATTTCATTTTTATAGACAAAGAATGTAAGTCCCCCATTGACGACCAGCCAGTTCCCATGTTCTTAGAAGACTCAGAAGCAGTGCTTGATGAGGAAAAGACTCAGATGGAGGTTGAAATGGACGATGTAGAGGAGGAGCATATTTCCGACATCGACAGCTGCGACGCGAAGAATCCACTTGCAGCCGTCGATTATGTCGATGATCTATATGCATATTATAGAAAGATGGAGTGTTTTAGCTGTGTTTCACCAAACTACATGGCCCAACAATCTGATATCAATGAAAAAATGAGAGCCATTTTGATTGATTGGCTAATTGAGGTGCACGATAAGTTCGAGCTGATGAGCGAGACATTATATCTCACGGTGAATGTAATAGATAGATTTTTGGCCCACCAAAAGGTTGTAAGAAGGAAGCTTCAATTGGTGGGGTTGGTTGCCATGCTCCTGGCTTGCAAATACGAGGAAGTGTCGGTTCCCGTGGTGAGCGATTTGATCGCTATATCGGACAACGCTTACTCTAGAAAAGACGTAATCGAAATGGAGACATTGATGCTAAATACACTACAATTCAATATGTCGGTCCCAACGCCTTATGTTTTCATGCGAAGATATCTCAAGGCTGCTCAATCTGACAAAAAGGTGGAGCTATTATCCTTCTTCTTGCTGGAGCTTTGTCTGGTGGAATATGAAATGGTCAAATACCCACCATCTTTGTTAGCTGCTTCTGCAATACACACAGCTCAGTCCGGTCTCAACGGATACCGGCGATGGAGCAGGACTTGCGAGCGGCATTCGAGCTATTCACAGGACGAGCTACTGGAATGTTCAAGAATGATGATAGGATTTCATCAAAATGCAGCAACTGGGAAATTAAGGGCAGTGCATAGTAAGTATGGTACATCCAAGATGGGGTATATTTCGAAAAATGAAGCAGCTGTACTCAAATTACAGTGA 969 43.14 SGFGDFIFIDKECKSPIDDQPVPMFLEDSEAVLDEEKTQMEVEMDDVEEEHISDIDSCDAKNPLAAVDYVDDLYAYYRKMECFSCVSPNYMAQQSDINEKMRAILIDWLIEVHDKFELMSETLYLTVNVIDRFLAHQKVVRRKLQLVGLVAMLLACKYEEVSVPVVSDLIAISDNAYSRKDVIEMETLMLNTLQFNMSVPTPYVFMRRYLKAAQSDKKVELLSFFLLELCLVEYEMVKYPPSLLAASAIHTAQSGLNGYRRWSRTCERHSSYSQDELLECSRMMIGFHQNAATGKLRAVHSKYGTSKMGYISKNEAAVLKLQ 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1217076 1218546 + Bma022691.1 Bma06g00078 83580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00078 322 Gene3D - 72 313 - -
Bma06g00078 322 PANTHER CYCLINS 2 319 IPR039361 -
Bma06g00078 322 PIRSF Cyclin_A_B_D_E 9 322 IPR039361 -
Bma06g00078 322 CDD CYCLIN 198 284 IPR013763 -
Bma06g00078 322 SMART Cyclin_C_2 200 317 IPR004367 -
Bma06g00078 322 Gene3D - 86 198 - -
Bma06g00078 322 Pfam Cyclin, C-terminal domain 200 313 IPR004367 -
Bma06g00078 322 PANTHER CYCLIN-B2-1 2 319 - -
Bma06g00078 322 SUPERFAMILY Cyclin-like 61 197 IPR036915 -
Bma06g00078 322 CDD CYCLIN 101 190 IPR013763 -
Bma06g00078 322 Pfam Cyclin, N-terminal domain 72 198 IPR006671 -
Bma06g00078 322 SMART cyclin_7 107 191 IPR013763 -
Bma06g00078 322 SMART cyclin_7 204 286 IPR013763 -
Bma06g00078 322 Coils Coil 30 50 - -
Bma06g00078 322 SUPERFAMILY Cyclin-like 199 314 IPR036915 -
Bma06g00078 322 ProSitePatterns Cyclins signature. 102 133 IPR006671 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00078 Bma-Chr6:1217076 Bma11g00315 Bma-Chr11:2966020 3.70E-76 dispersed
Bma14g01920 Bma-Chr14:40983192 Bma06g00078 Bma-Chr6:1217076 1.48E-13 transposed
Bma01g00703 Bma-Chr1:6423557 Bma06g00078 Bma-Chr6:1217076 6.49E-135 wgd
Bma01g02408 Bma-Chr1:81648498 Bma06g00078 Bma-Chr6:1217076 1.55E-126 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00078 K21777 - qsu:112016128 474.937