Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00081 ATGGCAATTGAAGAAGACATTGAGAGCTGTGGTAGTAGACCATCGCAATCATCGCAGGGAGCCCCTCGTCAACAGAGACAGAAACTCGAGGTGTATAACGAGGTGCTTATTAGAATCCAGGAATCGAATCACGAAGAGGCGAATCTTCCTGGATTTGATGATGAACTTTGGCTCCATTTCAATCGCCTTCCCGCCAGAAGTCATCCGCCACCTACATTTGGTTCTTCACCAAATCTTGAAGTACTTGCCCTGCAAGCTAAAAATTATATTGAAGACAGAGATGATGTAGAGAAAAATGATAGTGCTTTGAGTATGACGCCTTGTTTTCCTAAGTATCGTGGAACATATTGCAGTCAGGAAGTGGCTATTAAAATCTTAAAGCCTGAAAGAATCAATGGAGAGATGGTGAAAGAATTTTCTCAGGAAGTTTATATTTTGAGGAAAATTCGTCACAAGAATGTTGTCCAATTTATTGGTGCTTGCACTAGACCTCCGAATCTATGTATTGTGACTGAATTTATGTCAAGAGGGAGCGTATTCGACTTTCTTCATAAACAAAGAGGCGTTTTTAAGCTTCCTACTTTACTTAAAGTAGCATCTGATGTTTCTAAGGGAATGAACTATTTGCACCAAAACAAAATAATCCACAGAGATCTCAAGACTGCAAATCTTCTAATGAATGAAAACCAGGTTGTTAAGGTGGCTGATTTTGGGGTGGCCAGAGTACAGGCGCAGTCTGGGGTGATGACTGCTGAAACTGGAACATATCGTTGGATGGCTCCCGAGATCATTGAGCATAAGCCATATGATCAAAAAGCAGATGTCTTCAGCTTTGGAATATCAATATGGGAGCTTCTAACTGGTGAAATTCCATACTCATACTTGACCCCATTGCAAGCAGCAGTTGGTGTGGTTCAGAAGGGACTAAGGCCTACGATCCCCAAAAATACGCATCCAAGACTCGCGGAATTGCTTGAGAGATGCTGGCAACAAGATCCAACTCAAAGACCCGAGTTCTCTGAAATTCTCGAAATTCTTCAGCAAATAAGCGAGCAGATCGAAATTGAGGGGGACGACGGGAGCAAGAAGAACAGATCATCAGGTGGCATATTTTCTGCACTAAAATGGGGACACCATTGA 1140 42.28 MAIEEDIESCGSRPSQSSQGAPRQQRQKLEVYNEVLIRIQESNHEEANLPGFDDELWLHFNRLPARSHPPPTFGSSPNLEVLALQAKNYIEDRDDVEKNDSALSMTPCFPKYRGTYCSQEVAIKILKPERINGEMVKEFSQEVYILRKIRHKNVVQFIGACTRPPNLCIVTEFMSRGSVFDFLHKQRGVFKLPTLLKVASDVSKGMNYLHQNKIIHRDLKTANLLMNENQVVKVADFGVARVQAQSGVMTAETGTYRWMAPEIIEHKPYDQKADVFSFGISIWELLTGEIPYSYLTPLQAAVGVVQKGLRPTIPKNTHPRLAELLERCWQQDPTQRPEFSEILEILQQISEQIEIEGDDGSKKNRSSGGIFSALKWGHH 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1282980 1289514 - Bma022698.1 Bma06g00081 83583

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00081 379 Pfam Protein tyrosine and serine/threonine kinase 118 346 IPR001245 GO:0004672|GO:0006468
Bma06g00081 379 Gene3D Transferase(Phosphotransferase) domain 1 176 368 - -
Bma06g00081 379 PRINTS Tyrosine kinase catalytic domain signature 208 226 IPR001245 GO:0004672|GO:0006468
Bma06g00081 379 PRINTS Tyrosine kinase catalytic domain signature 273 295 IPR001245 GO:0004672|GO:0006468
Bma06g00081 379 PRINTS Tyrosine kinase catalytic domain signature 317 339 IPR001245 GO:0004672|GO:0006468
Bma06g00081 379 PRINTS Tyrosine kinase catalytic domain signature 171 184 IPR001245 GO:0004672|GO:0006468
Bma06g00081 379 PRINTS Tyrosine kinase catalytic domain signature 254 264 IPR001245 GO:0004672|GO:0006468
Bma06g00081 379 MobiDBLite consensus disorder prediction 1 27 - -
Bma06g00081 379 PANTHER ACT-LIKE TYROSINE KINASE FAMILY PROTEIN 112 363 - -
Bma06g00081 379 CDD STKc_MAP3K-like 112 346 - -
Bma06g00081 379 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 15 56 - -
Bma06g00081 379 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 67 109 - -
Bma06g00081 379 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 112 363 - -
Bma06g00081 379 ProSiteProfiles Protein kinase domain profile. 67 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma06g00081 379 SMART serkin_6 112 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma06g00081 379 ProSitePatterns Serine/Threonine protein kinases active-site signature. 214 226 IPR008271 GO:0004672|GO:0006468
Bma06g00081 379 SUPERFAMILY Protein kinase-like (PK-like) 114 351 IPR011009 -
Bma06g00081 379 Coils Coil 79 99 - -
Bma06g00081 379 MobiDBLite consensus disorder prediction 10 26 - -
Bma06g00081 379 Gene3D Phosphorylase Kinase; domain 1 111 175 - -
Bma06g00081 379 PANTHER ACT-LIKE TYROSINE KINASE FAMILY PROTEIN 15 56 - -
Bma06g00081 379 PANTHER ACT-LIKE TYROSINE KINASE FAMILY PROTEIN 67 109 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00081 - - - tcc:18610694 443.736
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma03g01255 Bma06g00081 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00620 Bma-Chr3:5114687 Bma06g00081 Bma-Chr6:1282980 2.74E-16 dispersed
Bma06g00081 Bma-Chr6:1282980 Bma08g00742 Bma-Chr8:43584343 2.86E-17 dispersed
Bma14g00625 Bma-Chr14:6750234 Bma06g00081 Bma-Chr6:1282980 9.84E-27 dispersed
Bma01g02697 Bma-Chr1:84412530 Bma06g00081 Bma-Chr6:1282980 4.93E-34 transposed
Bma01g02388 Bma-Chr1:81458040 Bma06g00081 Bma-Chr6:1282980 1.21E-123 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g112 Blo04g00867 . . . . . Bma06g00081 . . . Cma10g00063 . Car10g00050 . . . . Bhi02g00516 . . . . . . Cla06g01740 Cam06g1930 Cec06g1980 Cco06g1984 Clacu06g1886 Cmu06g1828 Cre06g2643 . Cone16ag0269 . . . . . . . . . Bda14g01365 . . Bma03g01255 . . . . . . . . . . . . . . . . . Cla04g00983 Cam04g1023 Cec04g1147 Cco04g1211 Clacu04g1052 Cmu04g1039 Cre04g1093 Lsi06g01639 Csa01g00058 Chy02g02661 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016706 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 1 5
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66523 PF07714 PK_Tyr_Ser-Thr 1.60E-68 CL0016 Bma PK