Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00083 ATGGATTTTACTGCGTATTCGTCTCGGTCTTCCTCGTCGTCGTCTTCTCCGTTTGCTAATTCCGTCGAGAGAGTCATGGAAACCTGCTGCTACGCGGTTACCGCCATTATTGGGAATATTTTATCGGCGATCTTCACATTTTCCTTCGCTCTAGTGGGTACCCTGTTAGGAGCCATGACCGGAGCATTGATTGGGCAGGAGACAGAGAGTGGATTCGTCAGAGGTGCGGCCATCGGAGCAATCTCCGGCGCTGTTTTCTCCATTGAAGTCTTTGAATCTTCTCTCGTTCTTTGGAAGTCTGATGAATCTGGCATAGTCTGTCTTCTCTACCTGATTGATGTCATTTCAAGCCTCATAAGCGGGAGACTCGTTCGAGAGCGTATCGGTCCGGCAATATTCAGCGCGGTTCAAAGTCAGATTGGCGTCGGAGAGTTGAATTTCGAGGACTTGCCCAATATATTCGACACGAGCAGCACTAAAGGGCTGGCCGGAGACTCCGTCGAGAAAATTCCGAAGATCACAATTTCAGAGAACAATGACTTGGATGCTTCTGGATATAAAGTTTCTTGCTCAGTTTGCCTCCAGGATTTCCAAGTAGGAGAGACGGTGAGAAGTTTACCTCAATGCCATCACATGTTTCACTTACCCTGCATAGACAAATGGCTTCTCAAACACGGTTCTTGCCCATTATGCAGAAGGGATCTCTGA 708 47.88 MDFTAYSSRSSSSSSSPFANSVERVMETCCYAVTAIIGNILSAIFTFSFALVGTLLGAMTGALIGQETESGFVRGAAIGAISGAVFSIEVFESSLVLWKSDESGIVCLLYLIDVISSLISGRLVRERIGPAIFSAVQSQIGVGELNFEDLPNIFDTSSTKGLAGDSVEKIPKITISENNDLDASGYKVSCSVCLQDFQVGETVRSLPQCHHMFHLPCIDKWLLKHGSCPLCRRDL 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1321675 1323308 + Bma022701.1 Bma06g00083 83585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00083 235 CDD RING-H2_PA-TM-RING 190 232 - -
Bma06g00083 235 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 9 235 IPR044523 -
Bma06g00083 235 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 152 235 IPR013083 -
Bma06g00083 235 Pfam YMGG-like Gly-zipper 49 85 IPR027367 -
Bma06g00083 235 SMART ring_2 190 231 IPR001841 -
Bma06g00083 235 PANTHER RING/U-BOX SUPERFAMILY PROTEIN-RELATED 9 235 - -
Bma06g00083 235 Pfam Ring finger domain 189 232 IPR001841 -
Bma06g00083 235 ProSiteProfiles Zinc finger RING-type profile. 190 232 IPR001841 -
Bma06g00083 235 SUPERFAMILY RING/U-box 189 235 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00083 Bma-Chr6:1321675 Bma09g00185 Bma-Chr9:7221804 2.06E-118 dispersed
Bma03g00136 Bma-Chr3:1029584 Bma06g00083 Bma-Chr6:1321675 3.91E-12 transposed
Bma03g00946 Bma-Chr3:10025418 Bma06g00083 Bma-Chr6:1321675 1.22E-147 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00083 - - csv:101220376 381.719