Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma06g00083 | ATGGATTTTACTGCGTATTCGTCTCGGTCTTCCTCGTCGTCGTCTTCTCCGTTTGCTAATTCCGTCGAGAGAGTCATGGAAACCTGCTGCTACGCGGTTACCGCCATTATTGGGAATATTTTATCGGCGATCTTCACATTTTCCTTCGCTCTAGTGGGTACCCTGTTAGGAGCCATGACCGGAGCATTGATTGGGCAGGAGACAGAGAGTGGATTCGTCAGAGGTGCGGCCATCGGAGCAATCTCCGGCGCTGTTTTCTCCATTGAAGTCTTTGAATCTTCTCTCGTTCTTTGGAAGTCTGATGAATCTGGCATAGTCTGTCTTCTCTACCTGATTGATGTCATTTCAAGCCTCATAAGCGGGAGACTCGTTCGAGAGCGTATCGGTCCGGCAATATTCAGCGCGGTTCAAAGTCAGATTGGCGTCGGAGAGTTGAATTTCGAGGACTTGCCCAATATATTCGACACGAGCAGCACTAAAGGGCTGGCCGGAGACTCCGTCGAGAAAATTCCGAAGATCACAATTTCAGAGAACAATGACTTGGATGCTTCTGGATATAAAGTTTCTTGCTCAGTTTGCCTCCAGGATTTCCAAGTAGGAGAGACGGTGAGAAGTTTACCTCAATGCCATCACATGTTTCACTTACCCTGCATAGACAAATGGCTTCTCAAACACGGTTCTTGCCCATTATGCAGAAGGGATCTCTGA | 708 | 47.88 | MDFTAYSSRSSSSSSSPFANSVERVMETCCYAVTAIIGNILSAIFTFSFALVGTLLGAMTGALIGQETESGFVRGAAIGAISGAVFSIEVFESSLVLWKSDESGIVCLLYLIDVISSLISGRLVRERIGPAIFSAVQSQIGVGELNFEDLPNIFDTSSTKGLAGDSVEKIPKITISENNDLDASGYKVSCSVCLQDFQVGETVRSLPQCHHMFHLPCIDKWLLKHGSCPLCRRDL | 235 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 1321675 | 1323308 | + | Bma022701.1 | Bma06g00083 | 83585 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma06g00083 | 235 | CDD | RING-H2_PA-TM-RING | 190 | 232 | - | - | |
Bma06g00083 | 235 | PANTHER | NEP1-INTERACTING PROTEIN-LIKE 2 | 9 | 235 | IPR044523 | - | |
Bma06g00083 | 235 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 152 | 235 | IPR013083 | - | |
Bma06g00083 | 235 | Pfam | YMGG-like Gly-zipper | 49 | 85 | IPR027367 | - | |
Bma06g00083 | 235 | SMART | ring_2 | 190 | 231 | IPR001841 | - | |
Bma06g00083 | 235 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN-RELATED | 9 | 235 | - | - | |
Bma06g00083 | 235 | Pfam | Ring finger domain | 189 | 232 | IPR001841 | - | |
Bma06g00083 | 235 | ProSiteProfiles | Zinc finger RING-type profile. | 190 | 232 | IPR001841 | - | |
Bma06g00083 | 235 | SUPERFAMILY | RING/U-box | 189 | 235 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma06g00083 | Bma-Chr6:1321675 | Bma09g00185 | Bma-Chr9:7221804 | 2.06E-118 | dispersed | |
Bma03g00136 | Bma-Chr3:1029584 | Bma06g00083 | Bma-Chr6:1321675 | 3.91E-12 | transposed | |
Bma03g00946 | Bma-Chr3:10025418 | Bma06g00083 | Bma-Chr6:1321675 | 1.22E-147 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma06g00083 | - | - | csv:101220376 | 381.719 |