Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00088 ATGTCGCGTTGTTTTCCTTACCCCCCACCTGCGTACGTAAAGAACGGGATCCGCGATGAAGCCCTGATCGAATCGATCAAGGTTTGTTCGAGAATCCGTAAAGAAGTAGAGAAGGCCAAGAAAGAGAAGCGGAGACAGAGGAAACATGAAAAGAAAGTTAGGGAGAGGACAAAAAAAAATGGAGAGGTTGAAATAAAGAAGCATCATAAAAAGAGACAAAGGGATGGTAGGAGCTCCATAGATCAGCAAAGAGGTGATAAAGAAAACACCAGGCAAATCAAAGTTGGTCATCTTGAGAGAAGTGTCGTAACAGAAGAACATGGTCATCCTGTTGGATCCCAGATTTCTACTGATAGTACTTACAACATCAACAAAAGGCTAAAACAACAAAATCCTTCTGTCTATGGAGAAGTGCACAATCCTGGTGACATTATCAGGATCAAATTGCCCGCCCAAATGCACAAAGATCCAGATGTGCTCCCTAAGGAACAGCCTTGCTCTTCCTGCGAAAGAGGGCAGTATGAATCTGCTCCTAGACCCAGCATTGATATGGCCGAACTTTGCTGTTCTACTTCTGCAATTGTCTGTGACGGACTCAGTTTCCGGCCAATTCAACAGAAGTCCCGCCCCACTTCTGCGAGGGCTGAAGCAACTTCATTGAACGGTTTAGCAAGCGAGTCCTTGGCCGCAGAATTAAAGGATCTGGTTGAAAACTTGTTGACTCCTCCACTGCCAGAGGAATGGACAATTCCTGATCTGGGGTGGCTGTTTGACACGAAGCAAAGCAAGAATGGTGCAACCGAAAGATGCAGTATCAGTATCGAAAGAAAGTTTCCGAGACTTGATAGCTCGAACCCATGGCCTTGTGCTCAGTTTCTGCCTGATGCTGATGTATATGCTTTGCCATACTCAGTCCCCTTCTAA 924 45.56 MSRCFPYPPPAYVKNGIRDEALIESIKVCSRIRKEVEKAKKEKRRQRKHEKKVRERTKKNGEVEIKKHHKKRQRDGRSSIDQQRGDKENTRQIKVGHLERSVVTEEHGHPVGSQISTDSTYNINKRLKQQNPSVYGEVHNPGDIIRIKLPAQMHKDPDVLPKEQPCSSCERGQYESAPRPSIDMAELCCSTSAIVCDGLSFRPIQQKSRPTSARAEATSLNGLASESLAAELKDLVENLLTPPLPEEWTIPDLGWLFDTKQSKNGATERCSISIERKFPRLDSSNPWPCAQFLPDADVYALPYSVPF 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1366674 1368738 + Bma022706.1 Bma06g00088 83590

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00088 307 PANTHER BNAANNG08330D PROTEIN 1 307 - -
Bma06g00088 307 MobiDBLite consensus disorder prediction 40 54 - -
Bma06g00088 307 PANTHER MYB-LIKE PROTEIN X 1 307 - -
Bma06g00088 307 Coils Coil 29 56 - -
Bma06g00088 307 MobiDBLite consensus disorder prediction 75 94 - -
Bma06g00088 307 MobiDBLite consensus disorder prediction 37 94 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00088 - - - gra:105787460 228.794
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00718 Bma-Chr1:6574861 Bma06g00088 Bma-Chr6:1366674 2.81E-08 wgd
Bma05g00173 Bma-Chr5:4869809 Bma06g00088 Bma-Chr6:1366674 5.35E-16 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1158 . Blo16g00091 . . . Bpe13g00405 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1696 Cone9ag1620 . . . . . . Bda11g01826 . . . . Bma06g00088 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003832 2 2 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 3 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g00088 Bma_Chr06 FPKM 11.624649 12.462034 10.512638 11.187257 8.816308 10.710477 10.562561 7.874131 8.282166 8.992655