Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00089 ATGGTTTCCGATGGGATCGCAGACGAAGAAAAATGGCTGGCAGCTGGGATTGCTGGTCTCCAGCAGAACGCGTTCTACATGCATCGTGCTCTGGATTCCAACAATTTGAAAGATGCCTTGAAATATTCGGCGCAGATGCTTTCCGAGCTGCGTACTTCGAAACTTTCTCCGCATAAATACTACGAATTATATATGCGAGCATTTGATGAATTGAGGAAGTTGGAAATGTTCTTTAAGGAAGAGGCTAGACGAGGATGTTCAATTATCGATTTGTATGAACTCGTACAGCATGCGGGTAACATACTACCAAGATTGTACCTTTTATGTACTGTAGGATCAGTGTATATTAAATCCAAGGAAGCTCCTGCAAAGGACGTTCTTAAAGACCTGGTTGAAATGTGCCGAGGTGTTCAGCATCCTTTACGGGGCCTCTTTTTGAGGAGTTACCTTTCTCAAGTCAGTCGAGACAAGTTACCTGATATTGGTTCTGAGTATGAAGGAAATGAACAAACTTTGGGTGCGGATGCAGCATCAGGTTGGTTGGAATGTCTATGTTATAGTGCTTGTGAATCATTCATAGTCTTAGCTGATCCTGTGTTGAGGCTTGCTGTCGGGCTTTCTGGTCTGCAGGGACCTGCCCGGGATAAGGAGAAACGGGAGAAGGAAAGGAGTGAGCTACGCGATCTCGTTGGAAAGAACTTGCATGTCCTCAGTCAGATTGAAGGTATTGACCTTGAATTGTACAAAGAAACAGTCCTTCCCAGGGTTTTGGAGCAGGTTGTTAATTGTAAAGATAACATAGCTCAATTTTATTTGATGGATTGCATAATTCAAGTATTTCCTGATGAGTATCACTTGCAAACTCTTGATATATTGTTAGGCTCTTGCCCCCAACTTCAGCCATCTGTTGACATTAAGACAGTGCTAGCCCAATTAATGGAAAGACTTTCAAACTATGCTGCGTCCAGTATTGAGGTGTTGCCGGAGTTTTTGCAAGTAGAAGCTTTTTCCAAATTGAGTAGTGCCATTGGGAAGGTTATAGAAGCGCAGGTTGAGATGCCGACGGAAGGAGTTGTTTCCCTATATTCTGCTCTTCTTACATTTACGCTTCATGTACATCCTGATCGGCTTGATTATGCAGACTTAGTTATGGGCGCATGTGTTAAAAAACTATCTGGAAAAGGAAAAATTGAAGACAGCAAAGCAACAAAACAAATTGTTGCACTCTTAAGTGCTCCATTGAATAAGTATAATGACGTAGTCACTGTCTTGAAGCTTTCAAACTATCCACGTGTTATGGAGTACCTTGATAATGGAACGAATAAAGTCATGGCATCTGTTATTATACAAAGTATTTTGAAAAACAAAACTCGCATATCCACGGCCGACAAAGTGGACGCGTTGTTTGAACTAATCAAAGGGCTTATCAAAGATTCAGATGGGACTGTTCCTAATGAGGTCGATGAAGATGATTTCAAGGAGGAGCAAAATTCCGTTGCACGGCTAGTTCAGATGCTATATAATGATGATCCAGAAGAGATGTTTAAGGTCATATGTACTTTAAAGAATCATATTTTATCTGGTGGATTAAAGCGCCTACCTTTCACAGTGCCTGCCCTTGTTTTTTCTTCTCTGAAGCTGGCTAAGCAATTACAAGGACAAGAGGAAAATCCCTTTGGAAATGACGCATCAACAACACCAAAGAAAATTTTCCAGCTTTTGACGCAGACTATTGAGGTTCTTTCAAGTGTTCCAGCTTCTGAATTGGCAATGCGGTTATATTTGCAATGTGCTGAGGTTGCAAATGAATGTGATTTAGAGCCTGTGGCTTATGAATTTTTCACCCAGGCATATATTCTGTATGAGGAAGAAATTTCAGATTCGAAAGCACAAGTAACAGCCATTCATTTGATAATAGGGACTCTTCAGCGGATGCACGTCTTTGGTGTTGAAAACAGAGACACTTTAACTCACAAGGCCACTGGGTACTCCGCAAAGCTGTTAAAGAAGCCTGATCAATGCAGAGCAATTTATGCATGTTCACATCTTTTCTGGATTGATGATCAGGATGATATGAAGGATGGAGAAAGAGTTCTGCTTTGCCTGAAGCGTGCAATGAGAATTGCCAATGCTGCGAAACAAATGAGCAATGTTACACGAGGAAGCACAGGATCAGTGACTCTCTTTATTGAGATACTTAACAAATACTTGTATTTCTACGAGAAGGGAAATCCGCAAATCACAGTTGCTGCAATTCAGGGGCTGATTGAATTGATTACAACTGAAATGCAACGTGATTCAACTGAAGCAGATGCAGCTGCTGATGCTTTTTTTGCCAGCACACTACGCTACATTCAATTCCAGAAGCAGAAAGATGGGGCAATTGGGGAGAAGTACGAGGTGATTAAGGTTTGA 2415 41.45 MVSDGIADEEKWLAAGIAGLQQNAFYMHRALDSNNLKDALKYSAQMLSELRTSKLSPHKYYELYMRAFDELRKLEMFFKEEARRGCSIIDLYELVQHAGNILPRLYLLCTVGSVYIKSKEAPAKDVLKDLVEMCRGVQHPLRGLFLRSYLSQVSRDKLPDIGSEYEGNEQTLGADAASGWLECLCYSACESFIVLADPVLRLAVGLSGLQGPARDKEKREKERSELRDLVGKNLHVLSQIEGIDLELYKETVLPRVLEQVVNCKDNIAQFYLMDCIIQVFPDEYHLQTLDILLGSCPQLQPSVDIKTVLAQLMERLSNYAASSIEVLPEFLQVEAFSKLSSAIGKVIEAQVEMPTEGVVSLYSALLTFTLHVHPDRLDYADLVMGACVKKLSGKGKIEDSKATKQIVALLSAPLNKYNDVVTVLKLSNYPRVMEYLDNGTNKVMASVIIQSILKNKTRISTADKVDALFELIKGLIKDSDGTVPNEVDEDDFKEEQNSVARLVQMLYNDDPEEMFKVICTLKNHILSGGLKRLPFTVPALVFSSLKLAKQLQGQEENPFGNDASTTPKKIFQLLTQTIEVLSSVPASELAMRLYLQCAEVANECDLEPVAYEFFTQAYILYEEEISDSKAQVTAIHLIIGTLQRMHVFGVENRDTLTHKATGYSAKLLKKPDQCRAIYACSHLFWIDDQDDMKDGERVLLCLKRAMRIANAAKQMSNVTRGSTGSVTLFIEILNKYLYFYEKGNPQITVAAIQGLIELITTEMQRDSTEADAAADAFFASTLRYIQFQKQKDGAIGEKYEVIKV 804
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1369582 1378753 + Bma022707.1 Bma06g00089 83591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00089 804 PANTHER VACUOLAR SORTING PROTEIN 35 2 804 IPR005378 GO:0015031|GO:0030906|GO:0042147
Bma06g00089 804 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 35A 2 804 - -
Bma06g00089 804 Gene3D - 480 789 IPR042491 -
Bma06g00089 804 Pfam Vacuolar protein sorting-associated protein 35 12 761 IPR005378 GO:0015031|GO:0030906|GO:0042147
Bma06g00089 804 PIRSF Retromer_Vps35 2 804 IPR005378 GO:0015031|GO:0030906|GO:0042147
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma03g01040 Bma06g00089 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02380 Bma-Chr1:81420867 Bma06g00089 Bma-Chr6:1369582 0 wgd
Bma03g00951 Bma-Chr3:10114076 Bma06g00089 Bma-Chr6:1369582 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00089 K18468 - csv:101218480 1332.78