Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00093 ATGGACTTTCCTCATTCTGCCCAACATCACCCTTTAATGGCATTTTTCTGCCACTGCCATCATCAGTCTCGTCGGACTTTGTTTATGCTAGCTGTTTTCCTAATTGGGCATGGAGCTTCAGGAGCGACGTTCACATTTGTGAACAACTGCGAGTTTACAGTATGGCCGGGAATCCTTGGTAGCCCAAAACTAGATAGTACAGGCTTTGAGCTAGAAAAGGGCGGATCCCGCTCTTTCCAAGCTCCGTCCGGCTGGTCCGGCCGATTCTGGGGTCGAACCAGCTGCAACTTCGACGCGTCAGGCCGTGGCGTCTGCGCCACTGGAGACTGTGGATCCGGCGAGGTCGAGTGCAATGGGGCCAGCGCTACTCCTCCGGCGACGCTGGCTGAGTTTACACTTGGCTCCGGTTCGCAGGATTTCTACGACGTTAGCCTCGTTGACGGATATAACCTACCAATGACCGTCGAAGGAACGGGCGGGTCGGGTCCGTGCGAAACCACGGGTTGCGTATCGGACCTCAACCAGCAGTGCCCGACGGAATTGAGAGCGGAAGGCGGTGGTGCATGTAGAAGTGCGTGCGAAGCATTTGGGACGGAGGAGTACTGTTGTAGCGGCGCGTATAATTCTCCGGCCATTTGTAAACCTTCAATGTACTCGCAGATGTTCAAATCTGCCTGCCCAAAATCATATAGCTACGCTTACGACGACGCCACCAGCACATTTACCTGCACCGGAGCAGATTATACAATCACATTTTGCCCTTCTTCTCCAAGTCTGAAGTCTGCGAGGGATTCATCGGCGATGATGGCCGGAGGGACGACCGGAGATGCCACGGGATCAGTCCCAGGTGCAGCAGAACAGACATCTTCGACTAACATTGCTTTGCTAGCCAATTTGGCCACCGGCGACTCCAGCCGGGCAAAACCTTTAACAGCTTTTCATTCTGCATTGATTTTCGCCATTTCTCTCAGCCTCTCCTTCTTCCGTTCTCAGACTGTAACATTGAATTAG 1011 53.31 MDFPHSAQHHPLMAFFCHCHHQSRRTLFMLAVFLIGHGASGATFTFVNNCEFTVWPGILGSPKLDSTGFELEKGGSRSFQAPSGWSGRFWGRTSCNFDASGRGVCATGDCGSGEVECNGASATPPATLAEFTLGSGSQDFYDVSLVDGYNLPMTVEGTGGSGPCETTGCVSDLNQQCPTELRAEGGGACRSACEAFGTEEYCCSGAYNSPAICKPSMYSQMFKSACPKSYSYAYDDATSTFTCTGADYTITFCPSSPSLKSARDSSAMMAGGTTGDATGSVPGAAEQTSSTNIALLANLATGDSSRAKPLTAFHSALIFAISLSLSFFRSQTVTLN 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1413130 1414337 - Bma022711.1 Bma06g00093 83595

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00093 336 ProSitePatterns Thaumatin family signature. 101 117 IPR017949 -
Bma06g00093 336 PANTHER OS03G0233200 PROTEIN 32 274 IPR001938 -
Bma06g00093 336 ProSiteProfiles Thaumatin family profile. 41 254 IPR001938 -
Bma06g00093 336 Pfam Thaumatin family 48 254 IPR001938 -
Bma06g00093 336 Gene3D Thaumatin 42 254 IPR037176 -
Bma06g00093 336 PANTHER THAUMATIN-LIKE PROTEIN 1 32 274 - -
Bma06g00093 336 SMART tha2 44 254 IPR001938 -
Bma06g00093 336 PRINTS Pathogenesis-related protein signature 101 130 IPR001938 -
Bma06g00093 336 PRINTS Pathogenesis-related protein signature 244 253 IPR001938 -
Bma06g00093 336 PRINTS Pathogenesis-related protein signature 67 76 IPR001938 -
Bma06g00093 336 PRINTS Pathogenesis-related protein signature 139 155 IPR001938 -
Bma06g00093 336 PRINTS Pathogenesis-related protein signature 43 55 IPR001938 -
Bma06g00093 336 PRINTS Pathogenesis-related protein signature 88 99 IPR001938 -
Bma06g00093 336 CDD TLP-PA 43 253 - -
Bma06g00093 336 SUPERFAMILY Osmotin, thaumatin-like protein 42 255 IPR037176 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00093 - - - qsu:112033406 454.907
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma03g00958 Bma06g00093 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00772 Bma-Chr1:7105640 Bma06g00093 Bma-Chr6:1413130 6.62E-77 dispersed
Bma02g00227 Bma-Chr2:2387002 Bma06g00093 Bma-Chr6:1413130 1.92E-77 dispersed
Bma05g00106 Bma-Chr5:3341307 Bma06g00093 Bma-Chr6:1413130 1.50E-78 dispersed
Bma06g00093 Bma-Chr6:1413130 Bma15g00945 Bma-Chr15:34898244 1.77E-121 dispersed
Bma12g00924 Bma-Chr12:40819143 Bma06g00093 Bma-Chr6:1413130 2.65E-61 dispersed
Bma12g00929 Bma-Chr12:40953388 Bma06g00093 Bma-Chr6:1413130 1.10E-61 dispersed
Bma14g00585 Bma-Chr14:6356268 Bma06g00093 Bma-Chr6:1413130 6.01E-54 dispersed
Bma02g00717 Bma-Chr2:30890504 Bma06g00093 Bma-Chr6:1413130 3.37E-56 transposed
Bma01g02374 Bma-Chr1:81385966 Bma06g00093 Bma-Chr6:1413130 4.00E-93 wgd
Bma03g00958 Bma-Chr3:10178704 Bma06g00093 Bma-Chr6:1413130 1.51E-72 wgd
Bma05g00168 Bma-Chr5:4778220 Bma06g00093 Bma-Chr6:1413130 7.88E-117 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1121 Blo04g00882 Blo16g00082 . . . . . . . . Cma03g00680 Cma07g00423 . . . . Cpe10g00668 Bhi03g00861 Tan03g2089 Cmetu04g0243 . . . . . . . . . . . . . . Cone9ag1608 Lsi01g00595 . . Cme08g00937 Blo05g00709 . . . . . Bma03g00958 Bma06g00093 Sed05g3598 Cmo03g00705 Cmo07g00420 Cma16g01240 Cma20g00764 . . . . Bhi10g01870 Tan05g1162 Cmetu11g0544 . . . . . . . . . . . Lsi07g01100 Csa06g03333 Chy02g00567 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000476 2 3 3 3 2 4 4 4 4 5 4 4 6 4 4 5 4 4 4 4 4 4 4 4 4 4 3 5 4 3 116
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g00093 Bma_Chr06 FPKM 2.970667 2.857176 2.535781 4.363364 5.82138 4.033981 4.145084 2.426773 3.103697 2.732244