Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00094 ATGGGGGAAGAGAGATTGACTGGTGTGGTACAGTGGTTCAATGACGCTAAGGGATTTGGTTTCATCAGGCCAGATGGGGACGGTCCAGATCTGTTTGTTCATCAATCGTCGATACAATCCGATGGCTACCGACGTCTTGTCGAGGGCGAGCAAGTTGAGTTCCAGATCGCTCCTGGCGATGATGGAAAATGTAAAGCCGTAGATGTTATCGGTATTGATGGATCTTCGTTCCAAGGGAACAGGAGGGATGGTTCAGGTGGTGGAAGAGGTGGTCGTGGCGGTGGGTATGGTTTTGGCGGTGGTTGGAGAGGTGACCGTCGAGATGGCGGTGGTGCTGGCTGCTATAGTTGCGGCGATCCAGGGCATTTGGCTAGGGATTGCGGTCGTTCTAATAACCGTGGAGTTGGCGGTGGGTGCTATTCTTGTGGCGAGGGTGGTCACTTGGCGAGAGATTGCCCTCAAGGCAACGGTGGGAGTGGTGGAGGAGGTGGTGGTGGGGCGGGTTCTTGCTATAATTGTGGTGGCTTTGGACACATGGCGAGGGATTGCAATAAGGGAAGCAGTGGAGGTAGAGGTGCAGGTGGAGGTGGAGGTGGAGGAGCCTGCTTTAAGTGTGGGGAATACGGACACTTGGCTAGGGATTGCGCCAGTGGAAGCAGCAATTTTGACAGAGGTGGAAGATTTGGTGGAAGTGGTGGTGCAGGTGGTGGCAGCACCTGCTTCAATTGTGGGAAGGCGGGACACTTTGCAAGAGAATGTCCTGAAGCAAATTAA 774 54.01 MGEERLTGVVQWFNDAKGFGFIRPDGDGPDLFVHQSSIQSDGYRRLVEGEQVEFQIAPGDDGKCKAVDVIGIDGSSFQGNRRDGSGGGRGGRGGGYGFGGGWRGDRRDGGGAGCYSCGDPGHLARDCGRSNNRGVGGGCYSCGEGGHLARDCPQGNGGSGGGGGGGAGSCYNCGGFGHMARDCNKGSSGGRGAGGGGGGGACFKCGEYGHLARDCASGSSNFDRGGRFGGSGGAGGGSTCFNCGKAGHFARECPEAN 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1428808 1429581 - Bma022713.1 Bma06g00094 83596

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00094 257 SUPERFAMILY Retrovirus zinc finger-like domains 226 255 IPR036875 GO:0003676|GO:0008270
Bma06g00094 257 Gene3D - 2 83 IPR012340 -
Bma06g00094 257 ProSiteProfiles Zinc finger CCHC-type profile. 240 255 IPR001878 GO:0003676|GO:0008270
Bma06g00094 257 PANTHER COLD SHOCK PROTEIN 2 1 103 - -
Bma06g00094 257 PANTHER COLD SHOCK PROTEIN 2 108 137 - -
Bma06g00094 257 SUPERFAMILY Retrovirus zinc finger-like domains 106 155 IPR036875 GO:0003676|GO:0008270
Bma06g00094 257 Gene3D - 165 193 - -
Bma06g00094 257 Gene3D - 197 226 - -
Bma06g00094 257 Gene3D - 103 136 - -
Bma06g00094 257 Gene3D - 137 161 - -
Bma06g00094 257 Gene3D - 234 257 - -
Bma06g00094 257 SUPERFAMILY Retrovirus zinc finger-like domains 162 218 IPR036875 GO:0003676|GO:0008270
Bma06g00094 257 ProSiteProfiles Cold-shock (CSD) domain profile. 5 71 IPR002059 GO:0003676
Bma06g00094 257 PANTHER COLD SHOCK PROTEIN 2 134 256 - -
Bma06g00094 257 SUPERFAMILY Nucleic acid-binding proteins 4 72 IPR012340 -
Bma06g00094 257 SMART csp_8 7 72 IPR011129 GO:0003676
Bma06g00094 257 ProSiteProfiles Zinc finger CCHC-type profile. 202 215 IPR001878 GO:0003676|GO:0008270
Bma06g00094 257 ProSiteProfiles Zinc finger CCHC-type profile. 139 154 IPR001878 GO:0003676|GO:0008270
Bma06g00094 257 PRINTS Cold shock protein signature 8 23 IPR002059 GO:0003676
Bma06g00094 257 PRINTS Cold shock protein signature 29 38 IPR002059 GO:0003676
Bma06g00094 257 PRINTS Cold shock protein signature 44 62 IPR002059 GO:0003676
Bma06g00094 257 Pfam Zinc knuckle 239 255 IPR001878 GO:0003676|GO:0008270
Bma06g00094 257 Pfam Zinc knuckle 169 184 IPR001878 GO:0003676|GO:0008270
Bma06g00094 257 Pfam Zinc knuckle 113 127 IPR001878 GO:0003676|GO:0008270
Bma06g00094 257 Pfam Zinc knuckle 201 216 IPR001878 GO:0003676|GO:0008270
Bma06g00094 257 Pfam Zinc knuckle 138 154 IPR001878 GO:0003676|GO:0008270
Bma06g00094 257 PANTHER COLD SHOCK DOMAIN PROTEIN 2 134 256 - -
Bma06g00094 257 ProSiteProfiles Zinc finger CCHC-type profile. 170 183 IPR001878 GO:0003676|GO:0008270
Bma06g00094 257 ProSitePatterns Cold-shock (CSD) domain signature. 19 38 IPR019844 -
Bma06g00094 257 PRINTS Eggshell protein signature 189 199 - -
Bma06g00094 257 PRINTS Eggshell protein signature 163 178 - -
Bma06g00094 257 PRINTS Eggshell protein signature 99 110 - -
Bma06g00094 257 PRINTS Eggshell protein signature 225 243 - -
Bma06g00094 257 ProSiteProfiles Zinc finger CCHC-type profile. 114 127 IPR001878 GO:0003676|GO:0008270
Bma06g00094 257 CDD CSP_CDS 7 69 IPR002059 GO:0003676
Bma06g00094 257 SMART c2hcfinal6 138 154 IPR001878 GO:0003676|GO:0008270
Bma06g00094 257 SMART c2hcfinal6 169 185 IPR001878 GO:0003676|GO:0008270
Bma06g00094 257 SMART c2hcfinal6 239 255 IPR001878 GO:0003676|GO:0008270
Bma06g00094 257 SMART c2hcfinal6 201 217 IPR001878 GO:0003676|GO:0008270
Bma06g00094 257 SMART c2hcfinal6 113 129 IPR001878 GO:0003676|GO:0008270
Bma06g00094 257 MobiDBLite consensus disorder prediction 75 94 - -
Bma06g00094 257 PANTHER COLD SHOCK DOMAIN PROTEIN 2 1 103 - -
Bma06g00094 257 PANTHER COLD SHOCK DOMAIN PROTEIN 2 108 137 - -
Bma06g00094 257 Pfam 'Cold-shock' DNA-binding domain 7 71 IPR002059 GO:0003676
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00094 K09250 CNBP; cellular nucleic acid-binding protein - csv:101216334 279.256
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma03g00959 Bma06g00094 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00831 Bma-Chr1:7819151 Bma06g00094 Bma-Chr6:1428808 2.32E-06 dispersed
Bma02g00225 Bma-Chr2:2378078 Bma06g00094 Bma-Chr6:1428808 1.04E-29 dispersed
Bma03g00602 Bma-Chr3:4953951 Bma06g00094 Bma-Chr6:1428808 5.59E-31 dispersed
Bma06g00094 Bma-Chr6:1428808 Bma13g00826 Bma-Chr13:33125334 1.76E-06 dispersed
Bma03g00959 Bma-Chr3:10191490 Bma06g00094 Bma-Chr6:1428808 1.83E-98 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1119 Blo04g00883 . . . Bpe15g00473 Bpe13g00413 . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0853 Cone12ag0714 Cone6ag1686 . . . . . . . Bda11g01834 . . . Bma03g00959 Bma06g00094 . . . Cma16g01239 . . . . . . . . . . . . . . . . . . . Lsi07g01102 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006925 2 0 0 2 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 1 1 0 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57411 PF00313 CSD 2.70E-23 CL0021 Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g00094 Bma_Chr06 FPKM 7.501587 8.266287 8.542052 8.738437 13.596224 12.776369 14.361539 13.585927 11.70679 11.980571