Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00095 ATTTGGGATTTTCCGTTTCGGGTGGTTTTGCAGATTCCTTTCTTCTACAGAGATGTCTCCGCCGGTGCGAGAGTGGTTTCCATCAAAGCTCAGGTTACCACTGAGGCTCCGGCTAAGGTTGAGAAGGAGTCTAAGAAAATGGAGGAAGGAGTAATCGTTAACAAATTCAAGCCGAAGAATCCATACATAGGAAGATGCCTTCTAAACACTAAGATTACAGGCGACGACGCTCCTGGAGAAACTTGGCACATGGTTTTCAGCACAGAAGGAGAAGTTCCGTATAGAGAAGGACAATCGATCGGGGTGATTGCTGACGGTGTAGACAAGAATGGGAAGCCTCACAAATTGAGATTGTACTCCATTGCTAGCAGTGCCCTTGGTGACTTTGGAGACTCCAAAACTGTTTCTCTATGCGTGAAACGCCTTGTTTACACCAATGACCAAGGAGAAATTGTCAAAGGAGTCTGCTCAAACTTCTTATGTGATCTAAAGCCTGGAGAGGAAGTGAAGATAACCGGCCCCGTTGGCAAAGAAATGCTCATGCCGAAAGATCCTAATGCCACCGTAATCATGCTCGGAACCGGAACTGGGATTGCTCCATTCCGATCGTTCTTGTGGAAAATGTTATTCGAGAAGCATGAAGATTACAAGTTCAATGGCCTGGCTTGGCTTTTCTTGGGTGTCCCGACAAGTAGCTCGCTGCTCTACAAGGAGGAGTTTGAGAAAATGAAAGAGAAGGCCCCGGACAACTTCAGGCTCGACTTTGCCGTCAGCAGGGAGCAAACGAACGCAAAGGGGGAGAAAATGTACATTCAAACGAGAATGGCGGAATACGCCGAAGAGCTGTGGGAATTGCTCAAGAAAGACAGCACCTATGTCTACATGTGTGGACTCAAAGGAATGGAGAAAGGAATCGACGATATCATGCTCGACTTGGCCGCCAAAGACGGGTTGGATTGGGTGGAGTACAAGAGACAATTGAAGAAAGCAGAGCAATGGAACGTGGAAGTCTAC 1014 47.24 IWDFPFRVVLQIPFFYRDVSAGARVVSIKAQVTTEAPAKVEKESKKMEEGVIVNKFKPKNPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYREGQSIGVIADGVDKNGKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNDQGEIVKGVCSNFLCDLKPGEEVKITGPVGKEMLMPKDPNATVIMLGTGTGIAPFRSFLWKMLFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPDNFRLDFAVSREQTNAKGEKMYIQTRMAEYAEELWELLKKDSTYVYMCGLKGMEKGIDDIMLDLAAKDGLDWVEYKRQLKKAEQWNVEVY 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1430049 1432135 - Bma031263 Bma06g00095 83597

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00095 338 Gene3D Translation factors 29 175 - -
Bma06g00095 338 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 59 181 IPR017927 GO:0016491
Bma06g00095 338 Pfam Oxidoreductase FAD-binding domain 95 177 IPR008333 -
Bma06g00095 338 SUPERFAMILY Riboflavin synthase domain-like 44 180 IPR017938 -
Bma06g00095 338 CDD CYPOR_like_FNR 54 338 - -
Bma06g00095 338 Pfam Oxidoreductase NAD-binding domain 191 305 IPR001433 GO:0016491
Bma06g00095 338 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 179 338 IPR039261 -
Bma06g00095 338 PANTHER FERREDOXIN--NADP REDUCTASE, LEAF ISOZYME 2, CHLOROPLASTIC 24 338 - -
Bma06g00095 338 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 117 124 IPR001709 GO:0016491
Bma06g00095 338 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 220 229 IPR001709 GO:0016491
Bma06g00095 338 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 232 243 IPR001709 GO:0016491
Bma06g00095 338 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 268 284 IPR001709 GO:0016491
Bma06g00095 338 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 292 300 IPR001709 GO:0016491
Bma06g00095 338 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 94 104 IPR001709 GO:0016491
Bma06g00095 338 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 190 209 IPR001709 GO:0016491
Bma06g00095 338 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 154 163 IPR001709 GO:0016491
Bma06g00095 338 PANTHER - 24 338 IPR015701 GO:0016491
Bma06g00095 338 PIRSF FNR-PetH 15 338 IPR035442 GO:0016491
Bma06g00095 338 Gene3D - 176 338 IPR039261 -
Bma06g00095 338 PIRSF Frd-NADP+_RD 10 338 IPR015701 GO:0016491
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00095 K02641 petH; ferredoxin--NADP+ reductase [EC:1.18.1.2] - vvi:100241976 633.254
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00095 Bma-Chr6:1430049 Bma11g00444 Bma-Chr11:5017259 2.06E-97 dispersed
Bma06g00095 Bma-Chr6:1430049 Bma01g00373 Bma-Chr1:3067118 4.76E-14 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1118 . Blo16g00081 . . . Bpe13g00414 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1685 Cone9ag1607 . . . . . . Bda11g01835 . . . . Bma06g00095 . . . . . . . . . . . . . . . . . . . . . . . Lsi07g01103 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009581 1 0 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 2 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g00095 Bma_Chr06 FPKM 0.356593 0.0 19.362658 18.10774 0.75516 0.0 0.7194 30.454847 27.894499 26.881554