Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00102 ATGGCGTCCGCCAATGGCGATACCAGATCTGGATCCGCCTCGAACGGCGGACCCACCGCCCCCGTCGCACCGAACAAGATTGCGCTGATTACAGGCATTACAGGCCAAGACGGTTCCTACCTGACTGAGTTTCTCCTCAACAAGGGATATGAGGTTCACGGTTTGATCCGAAGGTCGTCCAATTTCAACACGCAGCGGATCAATCACATCTACATCGATCCGCACAATGCTAACAAAGCTCGAATGAAGCTCCATTATGCTGATCTCAGCGACGCCTCCTCTCTTCGCCGCTGGCTCGATACCATTCTTCCCGACGAGGTCTACAACCTCGCCGCCCAATCTCACGTCGCTGTTTCTTTTGAAATTCCCGACTATACCGCCGACGTTGTAGCCACCGGAGCTCTCCGATTGCTCGAGGCCGTTCGCTCTCACATCTCCGCCACTGGCCGTAGTCACATCCGATATTACCAAGCCGGATCCTCTGAAATGTTCGGATCCACGCCACCTCCCCAATCGGAAACTACGCCGTTCCATCCCCGATCTCCTTATGCCGCGTCTAAATGCGCCGCGCATTGGTACACCGTGAACTATCGCGAGGCCTACGGACTCTTTGCATGTAATGGGATACTCTTCAATCACGAGTCGCCTAGGCGTGGAGAAAATTTCGTGACGAGAAAGGTCACAAGGGCGGTTGGCCGGATCAAAATTGGGCTTCAGAACAAGCTGTTTATGGGAAATTTGCAGGCGTCGAGAGATTGGGGATTTGCAGGGGACTACGTTGAGGCCATGTGGATGATGCTCCAGCAGGACAAACCAGACGACTACGTTGTAGCAACGGAAGAGTCGCACACGGTGGAGGAGTTTTTGGAAGTTGCATTTGGCTATGTGGGGTTAAATTGGAGAGACCATGTAGTGATCGACAAGAGGTATTTCAGGCCAACGGAGGTTGATAATCTGAAGGGAGATGCAAGCAAAGCCAAGAAGGTGCTTGGATGGAAGCCAAAAGTTGGATTTGAAATGCTGGTGAAGATGATGGTGGACGAAGATATCGAACTGGCCAAACGAGAGAAGGTGCTTGTTGATGCGGGCTACATGGATGCGCAACAGCAACCTTAA 1116 52.42 MASANGDTRSGSASNGGPTAPVAPNKIALITGITGQDGSYLTEFLLNKGYEVHGLIRRSSNFNTQRINHIYIDPHNANKARMKLHYADLSDASSLRRWLDTILPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHISATGRSHIRYYQAGSSEMFGSTPPPQSETTPFHPRSPYAASKCAAHWYTVNYREAYGLFACNGILFNHESPRRGENFVTRKVTRAVGRIKIGLQNKLFMGNLQASRDWGFAGDYVEAMWMMLQQDKPDDYVVATEESHTVEEFLEVAFGYVGLNWRDHVVIDKRYFRPTEVDNLKGDASKAKKVLGWKPKVGFEMLVKMMVDEDIELAKREKVLVDAGYMDAQQQP 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1461079 1462194 + Bma022719.4 Bma06g00102 83604

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00102 371 Gene3D - 29 335 - -
Bma06g00102 371 Pfam GDP-mannose 4,6 dehydratase 29 345 IPR016040 -
Bma06g00102 371 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 26 351 IPR036291 -
Bma06g00102 371 PANTHER GDP-MANNOSE 4,6-DEHYDRATASE 13 366 IPR006368 GO:0008446|GO:0019673
Bma06g00102 371 TIGRFAM gmd: GDP-mannose 4,6-dehydratase 26 352 IPR006368 GO:0008446|GO:0019673
Bma06g00102 371 PANTHER GDP-MANNOSE 4,6 DEHYDRATASE 1-LIKE 13 366 - -
Bma06g00102 371 Hamap GDP-mannose 4,6-dehydratase [gmd]. 26 355 IPR006368 GO:0008446|GO:0019673
Bma06g00102 371 Gene3D - 219 345 - -
Bma06g00102 371 CDD GDP_MD_SDR_e 28 351 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00102 K01711 gmd, GMDS; GDPmannose 4,6-dehydratase [EC:4.2.1.47] - cpap:110822457 701.819
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma06g00102 Bma15g00952 CCT
Bma03g00966 Bma06g00102 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00102 Bma-Chr6:1461079 Bma04g00651 Bma-Chr4:6274767 5.12E-10 dispersed
Bma15g00952 Bma-Chr15:35918943 Bma06g00102 Bma-Chr6:1461079 0 transposed
Bma03g00966 Bma-Chr3:10255735 Bma06g00102 Bma-Chr6:1461079 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1094 Blo04g00890 Blo16g00075 . . Bpe15g00467 Bpe13g00422 . Bma15g00952 . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1676 Cone9ag1597 . . . . . . Bda11g01842 . Bpe10g00148 . Bma03g00966 Bma06g00102 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004288 3 1 3 3 3 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g00102 Bma_Chr06 FPKM 1.726671 2.212528 1.605187 1.381469 4.207725 4.309791 4.472355 0.0 0.0 0.0