Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00103 ATGCGGGCGCTTTGCGACTCTTGTGAAAGTGCACCTGCTTCTGTATTTTGCGCCGCCGACGAGGCCGCCCTCTGCCGTGCCTGTGACGAGAAGGTAGTCCATTTGTGTAATAAGCTAGCCAGCCGACATATAAGAGTTGGACTAGCGAATCCCAGCGATGTTCCTCAATGCGATATATGCGAAAATGCTCCTGCTTTCTTCTACTGCGAGGTAGATGGCAGTTCCCTTTGTTTGCAATGCGATACAGTTGTTCACGTTGGAGGTAAAAGAACTCATAAAAGATACCTTGTGTTGAGGCAGAAAGTCGAGTTTCCAGGCGATAAACCCGGAAGTTTGGATGATCCAGCTCCACCAGCGACCGACGTCGGTGAGATGAAACAGTTACAAAATGAACCGCACAAAGTTACAGAGGGAGAGAACCGGAAAGATGATCGTCATTCTGCTGATCCAAATGATGTTGTGGATGGGGATAATGAGACAGACAGTAAAATGATTGATCTGAATATGAAGCCTCTTTGGATTCCTGGGCAAGCTTCGAATGATCCGGTAAGGTTGCATTGTTTGATCAATTGGTAA 576 47.05 MRALCDSCESAPASVFCAADEAALCRACDEKVVHLCNKLASRHIRVGLANPSDVPQCDICENAPAFFYCEVDGSSLCLQCDTVVHVGGKRTHKRYLVLRQKVEFPGDKPGSLDDPAPPATDVGEMKQLQNEPHKVTEGENRKDDRHSADPNDVVDGDNETDSKMIDLNMKPLWIPGQASNDPVRLHCLINW 191
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1487047 1488242 + Bma022722.1 Bma06g00103 83605

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00103 191 MobiDBLite consensus disorder prediction 127 162 - -
Bma06g00103 191 Gene3D Classic Zinc Finger 2 96 - -
Bma06g00103 191 PANTHER B-BOX ZINC FINGER PROTEIN 19 1 181 - -
Bma06g00103 191 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270
Bma06g00103 191 Pfam B-box zinc finger 54 93 IPR000315 GO:0008270
Bma06g00103 191 ProSiteProfiles Zinc finger B-box type profile. 52 97 IPR000315 GO:0008270
Bma06g00103 191 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 181 - -
Bma06g00103 191 SMART bboxneu5 52 97 IPR000315 GO:0008270
Bma06g00103 191 SMART bboxneu5 1 48 IPR000315 GO:0008270
Bma06g00103 191 CDD Bbox1_BBX-like 4 48 - -
Bma06g00103 191 MobiDBLite consensus disorder prediction 106 162 - -
Bma06g00103 191 CDD Bbox1_BBX-like 57 97 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00103 - - - tcc:18610806 266.159
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma06g00103 Bma15g00960 CCT
Bma06g00103 Bma15g00960 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00103 Bma-Chr6:1487047 Bma15g00960 Bma-Chr15:36260262 1.11E-78 dispersed
Bma01g00739 Bma-Chr1:6771919 Bma06g00103 Bma-Chr6:1487047 1.42E-20 wgd
Bma01g02354 Bma-Chr1:81170438 Bma06g00103 Bma-Chr6:1487047 6.17E-21 wgd
Bma05g00152 Bma-Chr5:4548087 Bma06g00103 Bma-Chr6:1487047 3.02E-21 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1083 Blo04g00894 Blo16g00074 . Bda10g00172 . Bpe13g00423 . Bma15g00960 Cmo04g00794 . Cma03g00703 Cma07g00442 Car03g00645 Car07g00389 . Cpe19g00845 Cpe10g00649 Bhi03g00888 . . . . . . Cla01g01962 Cam01g2052 Cec04g1710 Cco04g1775 Clacu01g2073 Cmu01g1950 Cre04g1625 . . Cone6ag1668 Cone9ag1590 Lsi01g00620 . . Cme08g00909 . Blo06g00321 Bda11g01843 . . . . Bma06g00103 . Cmo03g00728 Cmo07g00440 . . . . . . . . . . . . . . . . . . . . . Csa06g03304 Chy02g00591 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma02g00460 . 24 395 C2C2-CO-like Transcription Factor Family AT5G15850 52.3 2.0e-59 226.5
Bma02g00460 . 12 395 C2C2-CO-like Transcription Factor Family AT3G02380 53.2 7.5e-67 251.1
Bma01g01259 . 1 316 C2C2-CO-like Transcription Factor Family AT5G24930 52.7 1.1e-60 230.7
Bma06g00924 BCT 4 342 C2C2-CO-like Transcription Factor Family AT5G57660 51.8 3.0e-63 239.2
Bma06g00932 . 4 342 C2C2-CO-like Transcription Factor Family AT5G57660 51.8 3.0e-63 239.2
Bma12g00873 BCT,CCT 1 408 C2C2-CO-like Transcription Factor Family AT3G07650 53.8 4.6e-78 288.5
Bma02g01294 BCT,CCT 1 413 C2C2-CO-like Transcription Factor Family AT3G07650 52.8 1.3e-77 287.0
Bma12g00873 BCT,CCT 1 408 C2C2-CO-like Transcription Factor Family AT5G48250 51.9 1.5e-76 283.5
Bma02g01294 BCT,CCT 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 50.9 1.6e-75 280.0
Bma12g00873 BCT,CCT 1 408 C2C2-CO-like Transcription Factor Family AT5G48250 51.9 1.5e-76 283.5
Bma02g01294 BCT,CCT 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 50.9 1.6e-75 280.0
Bma12g00543 . 1 197 C2C2-CO-like Transcription Factor Family AT1G75540 57.5 2.4e-54 209.5
Bma15g00960 CCT,ECH 1 177 C2C2-CO-like Transcription Factor Family AT2G21320 62.1 6.9e-53 203.8
Bma06g00103 CCT,ECH 1 171 C2C2-CO-like Transcription Factor Family AT2G21320 59.6 1.2e-49 193.0
Bma15g00960 CCT,ECH 1 176 C2C2-CO-like Transcription Factor Family AT4G38960 61.6 4.6e-55 211.1
Bma06g00103 CCT,ECH 1 109 C2C2-CO-like Transcription Factor Family AT4G38960 80.7 2.2e-49 192.2
Bma12g00543 . 1 193 C2C2-CO-like Transcription Factor Family AT4G39070 58.0 1.2e-55 213.4
Bma05g00152 BCT 1 208 C2C2-CO-like Transcription Factor Family AT4G39070 52.6 6.1e-47 184.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004570 3 1 3 2 1 1 2 1 1 0 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 0 1 2 2 2 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57412 PF00643 zf-B_box 8.00E-08 No_clan Bma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g00103 Bma_Chr06 FPKM 4.264482 3.988513 6.824484 6.646223 6.90541 6.871971 7.934996 7.525865 8.747925 8.637722