Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00103 ATGCGGGCGCTTTGCGACTCTTGTGAAAGTGCACCTGCTTCTGTATTTTGCGCCGCCGACGAGGCCGCCCTCTGCCGTGCCTGTGACGAGAAGGTAGTCCATTTGTGTAATAAGCTAGCCAGCCGACATATAAGAGTTGGACTAGCGAATCCCAGCGATGTTCCTCAATGCGATATATGCGAAAATGCTCCTGCTTTCTTCTACTGCGAGGTAGATGGCAGTTCCCTTTGTTTGCAATGCGATACAGTTGTTCACGTTGGAGGTAAAAGAACTCATAAAAGATACCTTGTGTTGAGGCAGAAAGTCGAGTTTCCAGGCGATAAACCCGGAAGTTTGGATGATCCAGCTCCACCAGCGACCGACGTCGGTGAGATGAAACAGTTACAAAATGAACCGCACAAAGTTACAGAGGGAGAGAACCGGAAAGATGATCGTCATTCTGCTGATCCAAATGATGTTGTGGATGGGGATAATGAGACAGACAGTAAAATGATTGATCTGAATATGAAGCCTCTTTGGATTCCTGGGCAAGCTTCGAATGATCCGGTAAGGTTGCATTGTTTGATCAATTGGTAA 576 47.05 MRALCDSCESAPASVFCAADEAALCRACDEKVVHLCNKLASRHIRVGLANPSDVPQCDICENAPAFFYCEVDGSSLCLQCDTVVHVGGKRTHKRYLVLRQKVEFPGDKPGSLDDPAPPATDVGEMKQLQNEPHKVTEGENRKDDRHSADPNDVVDGDNETDSKMIDLNMKPLWIPGQASNDPVRLHCLINW 191
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1487047 1488242 + Bma022722.1 Bma06g00103 83605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00103 191 MobiDBLite consensus disorder prediction 127 162 - -
Bma06g00103 191 Gene3D Classic Zinc Finger 2 96 - -
Bma06g00103 191 PANTHER B-BOX ZINC FINGER PROTEIN 19 1 181 - -
Bma06g00103 191 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270
Bma06g00103 191 Pfam B-box zinc finger 54 93 IPR000315 GO:0008270
Bma06g00103 191 ProSiteProfiles Zinc finger B-box type profile. 52 97 IPR000315 GO:0008270
Bma06g00103 191 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 181 - -
Bma06g00103 191 SMART bboxneu5 52 97 IPR000315 GO:0008270
Bma06g00103 191 SMART bboxneu5 1 48 IPR000315 GO:0008270
Bma06g00103 191 CDD Bbox1_BBX-like 4 48 - -
Bma06g00103 191 MobiDBLite consensus disorder prediction 106 162 - -
Bma06g00103 191 CDD Bbox1_BBX-like 57 97 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma06g00103 Bma15g00960 CCT
Bma06g00103 Bma15g00960 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00103 Bma-Chr6:1487047 Bma15g00960 Bma-Chr15:36260262 1.11E-78 dispersed
Bma01g00739 Bma-Chr1:6771919 Bma06g00103 Bma-Chr6:1487047 1.42E-20 wgd
Bma01g02354 Bma-Chr1:81170438 Bma06g00103 Bma-Chr6:1487047 6.17E-21 wgd
Bma05g00152 Bma-Chr5:4548087 Bma06g00103 Bma-Chr6:1487047 3.02E-21 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57412 PF00643 zf-B_box 8.00E-08 No_clan Bma TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00103 - - tcc:18610806 266.159