Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00104 ATCGGAACGACGATCTGGACGGAGATGATGACGGGGTGGCAACGCTTAAGCTTCTTGGCGCTGTTCTCGATCTTTTTCACGCTCGGTAACGCCATACCTCCTGCGAAGTTTCTCCGATTCTCGGCAGACGGCAAATATTTGACCCAGAAGGAGCTCTGGTTCAATCAGACCCTTGACCATTTCTCTCCCTACGATCATCGTAATTTTGGACAGCGTTACTATGAATTCCTCGACTACTTCAGAATTCCAGATGGGCCAATTTTTTTGAAACTTTGTGGTGAATCTTCCTGTCCTGGAATAGCCAATGATTACATAAGTGTTTTGGCGAAGAAGTTTGGAGCAGCTGTGGTTTCTCTTGAGCATCGTTACTACGGGAAAAGCTCACCGGTTAAGTCGTTGACTACGGCCAACTTAAGATATCTTTCTTCAAAGCAAGCTCTTTTCGATTTGGCTGCTTTCCGTCAATTCTATCAGAATTCCTTGAATGCGAAACTCAACCGATCAAATGGCGAAAATCCATGGTTTGTCTTTGGTGTTTCCTACTCCGGAGTCTTGCAAGTTCAGGCAGTTGTTCTTGCTGTTTATAATTTCACTGAATTTGACCAGCAGGTAGGTGAATCTGCTGGTCCAGAATGTAAAGCTGCATTACAGGAAACTAATAAACTCGTCGAACAAATGCTTGTGACAGATAAAAAAGAAGTAAAGGCATTGTTTGGTGCAGCTCAGCTAGAAATTGATGGAGATTTCTTGTACTTCCTCGCAGATGCTGCCGTTACTGCGTTTCAGTACGGAAATCCCGATAAAGTATGCTCCCCTCTAATCGAAGCGAAAAAGGCCGGAAATGGTTTGTTGGACACTTATGCCAAATATGTGAAAGATTATTACCTTGGAAGCTTTGGTGTCGATGTTCAAACATACAATCAGAAACACTTGAAGAATACGAATCCGACCAAAGACAGTGCTGATAGGTTGTGGTGGTTCCAAGTTTGTACCGAAGTCGCATATTTTCAGGTGGCACCGGAAAACGATAGTGTTCGCTCCTCAAAAGTCGATGCAAGGCCTGTCTCTGACCACCTTATCGATGTTCATCCTTTGGTTGATTCATTTGCCTATCACTTGGATCTTTGCAAAAATGTTTTTGGAGAAGGCGTCTATCCTGATGTAACAGCGACGAACATATATTTCGGGGGAACAAAAATTGCTGGCTCAAAAATAGTCTTTACGAATGGTTCGCAAGACCCTTGGCGTCGAGCATCGAAGCAGATATCGTCTATATCGTCTCCAGACCCAGGCGATGCTGGGAATTGCAGCTCTCCTGATGCAGTGCACAAAGTTAGGCAACAGATTGTTGAACAGATAGACCTCTGGCTGTCTGAATGCCAATTCAGTAGCAGAAACTATGCATGA 1407 44.14 IGTTIWTEMMTGWQRLSFLALFSIFFTLGNAIPPAKFLRFSADGKYLTQKELWFNQTLDHFSPYDHRNFGQRYYEFLDYFRIPDGPIFLKLCGESSCPGIANDYISVLAKKFGAAVVSLEHRYYGKSSPVKSLTTANLRYLSSKQALFDLAAFRQFYQNSLNAKLNRSNGENPWFVFGVSYSGVLQVQAVVLAVYNFTEFDQQVGESAGPECKAALQETNKLVEQMLVTDKKEVKALFGAAQLEIDGDFLYFLADAAVTAFQYGNPDKVCSPLIEAKKAGNGLLDTYAKYVKDYYLGSFGVDVQTYNQKHLKNTNPTKDSADRLWWFQVCTEVAYFQVAPENDSVRSSKVDARPVSDHLIDVHPLVDSFAYHLDLCKNVFGEGVYPDVTATNIYFGGTKIAGSKIVFTNGSQDPWRRASKQISSISSPDPGDAGNCSSPDAVHKVRQQIVEQIDLWLSECQFSSRNYA 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1497659 1501272 + Bma022724.1 Bma06g00104 83606

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00104 468 SUPERFAMILY alpha/beta-Hydrolases 25 189 IPR029058 -
Bma06g00104 468 Pfam Serine carboxypeptidase S28 56 421 IPR008758 GO:0006508|GO:0008236
Bma06g00104 468 Gene3D alpha/beta hydrolase 47 242 IPR029058 -
Bma06g00104 468 Gene3D alpha/beta hydrolase 283 461 IPR029058 -
Bma06g00104 468 PANTHER OS10G0511600 PROTEIN 19 425 - -
Bma06g00104 468 PANTHER OS10G0511600 PROTEIN 430 463 - -
Bma06g00104 468 MobiDBLite consensus disorder prediction 420 439 - -
Bma06g00104 468 PANTHER PROTEASE S28 PRO-X CARBOXYPEPTIDASE-RELATED 19 425 - -
Bma06g00104 468 PANTHER PROTEASE S28 PRO-X CARBOXYPEPTIDASE-RELATED 430 463 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00104 - - - bhj:120092798 654.825
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00104 Bma-Chr6:1497659 Bma08g01166 Bma-Chr8:50635468 5.97E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1082 . Blo16g00073 . . . Bpe13g00424 . . Cmo04g00795 . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1667 Cone9ag1589 . . Chy07g01229 . . . Bda11g01844 . . . . Bma06g00104 . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00580 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003706 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 2 2 1 2 7 2 1 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g00104 Bma_Chr06 FPKM 5.816214 4.77903 0.238596 0.263566 0.821879 0.967695 1.007474 1.603378 1.786482 1.637688