Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00105 ATGGAGGCGGGACCATGGAGAAAAATGGGGAATCAATTGGCAATTGTCACGATGCTAATAATGGGAAGAATTGTCGCGTCGATAGTGCTCGGTGGAGGTGCAATTGCTGCCAATTCTAAGAGGAAAACATTTAAGAGGCAGCAAAATTTTCCCTCCAGGGTAAACTCGATGAACGATAGGACGGCGATTGAAGGAAATTCTTGGGCTACGAAGGAGCTTTTGGAGTTTGTTGCTCACGCGAGAAATGGTGATACGTCTGCGCTTTCTCAGTTTGATGTACAGTCTCTAGTGCTGGAATATATTAAAGCAAATAATCTTCGCGACCCTCAACAGAGAAGTCATATTCTTTGTGATCGTATGCTGATGAATCTGTTTGGAAAACAACGAGTTGGTCATTTTGAAATGCTCAAGCTTCTCGAATACCATTTTCTCACAAAAGAAAGTTCTTCAGCAGTCGACAGAAATAGCAAAGCTCTTGATGTCGTAGTTGGCCATGTGGAGGAAAAGGGAAATGATAGTCACCAATCGTTGAGTGATAGTGATAGAAAGCGTAAAACACATAAAAAGGCAGATAATAGGAAGCAACTGATGAATCCAGATGAATATGCAGCTATTGATGTTCACAACATCAACCTGATTTACTTGTCACGTAATTTGATAGAGTCCATAATGGGTGATGCCGAAAACTTCCGCGACAAAGTTGTGGATTCATTTGTTCGAATACGAATTTCAAACCGTGATCAAAAGCCTGACGTGTATAGGCTTGTTCAAGTTGTAGGCACTAGCAAGAGTTCTGAGCCATATGTGATTGGTGAGAAAACAGCTGATGTAATGCTTGATGTATTGAATCTAGACAAGAAAGAGGCAGTATCAATCGAAGGCATTTCAAATCAAGACTTTTCCGAGGACGAATGCAGGCGTCTACATGATAGTGTAAAATGTGGGCTTCTTAAGAGATTTACTGTGGGAGAGATTCAGAAGAAAGCAATGGCACTTCAAGCGCTGAAGGTTAATGATCCTATGGAATCAGAGATATTGCGGCTTAATCATCTCCGAGACCGAGCAAGTGAGAAGGGACACAAAAAAGAGCATAGAGAGTGTGTCGAAAAATTACAGCTTCTTAACTCTCCCGAAGAACGACAGCGTCGGCTCGTTGAAATCCCCGAAATACATGTGGATCCAACTTTGGACCCGAGTTTCAAACCTGACGACCATACAAAAGAATCAAACAAGAGTAAGCAAGGTGGCTTTAAGAGAGCGTGTAAAACTGGCTCTGGTAGGAAGCGTGGAGGACGGGATCAATTGACTGATTCGAGAAGCAGGATGGAAAATCGGTCGGCTATTACTTCTGGACAAAATATGCAGATATGTACAGCCAATCATTTAAATAATCCTACCAGTTTAGTCATTCGTAATGGGAGTAATCCTCTTTCAAATGGGATAGAACACTCCAATGATATTGATATGGACAAGATTTGGCACTACCAAGACCCGGCTGGAAAAATTCAGGGTCCGTTTTCAATGTCACAGCTGCAAAAATGGAGTTCAAGCGGACACTTCCCTCCTCATTTACGAGTATGGAGGATAAGTGAAAAGCCCGGTGATTCTATACTTCTAACTGATGCGATGAAGGGGCAATACGGGAAGAACTCGGTCAAAATACTTGAAGTATTTGGACTTGGACGATGTTCTGATGATGGCGATAATCAGCCAAATGATGAGTGGAGCCGAAATCGACATTCTAACGAGTCGGGTTCTCCTACCGATTGTTCTCTACCTGCAGATGGTGTCAATTCTAGCGAGTTTCCGCATAAAGGTTTTGAGCAAAGAACTGCGGAGGAAGATAGGGGACATAGCTACGAGAAACGTTCTGACAGTGACGGCTGTTCTGGGCAGTCTTCTGGTCAAAATTGGAGACCTCTGCCTGCAAATGCTTCTCTGGATTCTAGAAGTGGTGGCATTGCCTTGTCTAATTCGATTGAACAACAAAACCTGAACTTTGATTTCCCTGATCTTCCTAGCCCCACTCCGGCGAAATCGGATGTGGGCCTTACAGATCAGGCTGCTGAAATCAAACAATCTGCATCTTCAAGGATCCTTGTTCAAGATTCAGTTCCTAGCTGGAGTACAGGTTCGAGTTTGGTCGGCGGAAGGAAACAGCTTCCTGTTTATTCTCCTACACCAGCCAAAGCTTCTGCGGAGGAATGGGACTCCAGTCTTATTACTTCATCTTCTCTGAAACCAGCTGAATTTATCAGTGATTGCACCGCTACACCTGCTTCAGTAAACGATCGACTAACACACTCTTTGCCATCTCATCCTGCATCGAATATATCGCTTTGGCCAGAAATTATCGACCCTGAGGAGTTCAACTCCTTAGGAGACGAATCAGTCTCGGATTTGCTTGCGGAAGTAGAAGCTATGGAATCTTTGAGCGAATTGGCTTCGTCAACATCGATGATGAACTGTCGTGATGATTTGATGCTGGGTTGTAAAACCGATTGTTTTAGTTCTGTCGGGGGCTTGAGTCCAACTCTAGAGATGGGAAGAGGCGATGCTCTGAGCTCCACCGGTGATGGACAGGTTCCGTCCCAATCCACAATCACAGACAAACCGCTTCCGAAACTGCATATGTTTGATATTGATCTCCAAATGAAGGTAGCTGGCCCAACCACTGTCGAAGTGGACATAAATAAGAAGCTTGACAATGTTTCGACCAATCAATGGCAAGGCAATACCGGAATGCAAATCTCGACGCATCTTTCTGCGGCTTTATCCATGGAAACTGCAGAAAACACGTGGAGAATCGGATCAGAAGCTACGGATGCTAGTTGGGGAAGTGCAGATATCGAGTGGGGAGGGATCAATAGAGGAAACTCAAATTCCAGTCGGGAAATTCCACCGGAATCGATCCAAGAAATGGGAAGCATGAATTCAGGCACGTCAGCTGCATATAACACAACCAACTGGTATGGCCAACTGAAATATGGTGTTGATAGACTATCAAGTCCTAGAGATAATGGTAGAGGTAGGTCTTTCTGGGATAAGCAACCAGTATTCGGAGGAGGCGGGAATCGAAGTGTGCAGTCCCGGGCACCTCTGAGAGGTCAAGGCCAGCGAGTTTGTAAATTTTACGAAAGTGGGTGTTGCAAACGGGGGGCTTCGTGTTGTTACTTGCATCCTTAA 3186 44.41 MEAGPWRKMGNQLAIVTMLIMGRIVASIVLGGGAIAANSKRKTFKRQQNFPSRVNSMNDRTAIEGNSWATKELLEFVAHARNGDTSALSQFDVQSLVLEYIKANNLRDPQQRSHILCDRMLMNLFGKQRVGHFEMLKLLEYHFLTKESSSAVDRNSKALDVVVGHVEEKGNDSHQSLSDSDRKRKTHKKADNRKQLMNPDEYAAIDVHNINLIYLSRNLIESIMGDAENFRDKVVDSFVRIRISNRDQKPDVYRLVQVVGTSKSSEPYVIGEKTADVMLDVLNLDKKEAVSIEGISNQDFSEDECRRLHDSVKCGLLKRFTVGEIQKKAMALQALKVNDPMESEILRLNHLRDRASEKGHKKEHRECVEKLQLLNSPEERQRRLVEIPEIHVDPTLDPSFKPDDHTKESNKSKQGGFKRACKTGSGRKRGGRDQLTDSRSRMENRSAITSGQNMQICTANHLNNPTSLVIRNGSNPLSNGIEHSNDIDMDKIWHYQDPAGKIQGPFSMSQLQKWSSSGHFPPHLRVWRISEKPGDSILLTDAMKGQYGKNSVKILEVFGLGRCSDDGDNQPNDEWSRNRHSNESGSPTDCSLPADGVNSSEFPHKGFEQRTAEEDRGHSYEKRSDSDGCSGQSSGQNWRPLPANASLDSRSGGIALSNSIEQQNLNFDFPDLPSPTPAKSDVGLTDQAAEIKQSASSRILVQDSVPSWSTGSSLVGGRKQLPVYSPTPAKASAEEWDSSLITSSSLKPAEFISDCTATPASVNDRLTHSLPSHPASNISLWPEIIDPEEFNSLGDESVSDLLAEVEAMESLSELASSTSMMNCRDDLMLGCKTDCFSSVGGLSPTLEMGRGDALSSTGDGQVPSQSTITDKPLPKLHMFDIDLQMKVAGPTTVEVDINKKLDNVSTNQWQGNTGMQISTHLSAALSMETAENTWRIGSEATDASWGSADIEWGGINRGNSNSSREIPPESIQEMGSMNSGTSAAYNTTNWYGQLKYGVDRLSSPRDNGRGRSFWDKQPVFGGGGNRSVQSRAPLRGQGQRVCKFYESGCCKRGASCCYLHP 1061
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1504564 1508532 + Bma022725.1 Bma06g00105 83607

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00105 1061 MobiDBLite consensus disorder prediction 857 871 - -
Bma06g00105 1061 SMART gyf_5 491 546 IPR003169 GO:0005515
Bma06g00105 1061 MobiDBLite consensus disorder prediction 851 871 - -
Bma06g00105 1061 SUPERFAMILY Plus3-like 205 334 IPR036128 GO:0003677
Bma06g00105 1061 SMART rtf1 204 314 IPR004343 GO:0003677
Bma06g00105 1061 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44 605 1061 - -
Bma06g00105 1061 SMART swib_2 69 148 IPR019835 -
Bma06g00105 1061 MobiDBLite consensus disorder prediction 386 415 - -
Bma06g00105 1061 MobiDBLite consensus disorder prediction 169 196 - -
Bma06g00105 1061 Pfam SWIB/MDM2 domain 72 143 IPR003121 -
Bma06g00105 1061 ProSiteProfiles GYF domain profile. 490 544 IPR003169 GO:0005515
Bma06g00105 1061 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44 38 568 - -
Bma06g00105 1061 MobiDBLite consensus disorder prediction 426 440 - -
Bma06g00105 1061 ProSiteProfiles SWIB/MDM2 domain profile. 62 145 IPR003121 -
Bma06g00105 1061 MobiDBLite consensus disorder prediction 606 625 - -
Bma06g00105 1061 SUPERFAMILY GYF domain 487 544 IPR035445 -
Bma06g00105 1061 ProSiteProfiles Plus3 domain profile. 204 337 IPR004343 GO:0003677
Bma06g00105 1061 MobiDBLite consensus disorder prediction 1002 1031 - -
Bma06g00105 1061 Gene3D - 205 334 IPR036128 GO:0003677
Bma06g00105 1061 Pfam Plus-3 domain 209 312 IPR004343 GO:0003677
Bma06g00105 1061 CDD GYF 490 547 IPR003169 GO:0005515
Bma06g00105 1061 MobiDBLite consensus disorder prediction 581 595 - -
Bma06g00105 1061 Gene3D SWIB/MDM2 domain 55 152 IPR036885 -
Bma06g00105 1061 SUPERFAMILY SWIB/MDM2 domain 67 146 IPR036885 -
Bma06g00105 1061 ProSiteProfiles Zinc finger C3H1-type profile. 1036 1061 IPR000571 GO:0046872
Bma06g00105 1061 MobiDBLite consensus disorder prediction 626 650 - -
Bma06g00105 1061 MobiDBLite consensus disorder prediction 562 650 - -
Bma06g00105 1061 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 605 1061 - -
Bma06g00105 1061 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 38 568 - -
Bma06g00105 1061 MobiDBLite consensus disorder prediction 169 197 - -
Bma06g00105 1061 MobiDBLite consensus disorder prediction 386 448 - -
Bma06g00105 1061 Pfam GYF domain 493 532 IPR003169 GO:0005515
Bma06g00105 1061 Gene3D - 492 549 IPR035445 -
Bma06g00105 1061 CDD SWIB-MDM2_like 68 143 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00105 - - - tcc:18610813 858.211
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma03g00971 Bma06g00105 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00573 Bma-Chr3:4786331 Bma06g00105 Bma-Chr6:1504564 8.62E-08 dispersed
Bma06g00105 Bma-Chr6:1504564 Bma06g00419 Bma-Chr6:14991701 3.71E-07 dispersed
Bma03g00481 Bma-Chr3:3738320 Bma06g00105 Bma-Chr6:1504564 2.07E-25 transposed
Bma03g00971 Bma-Chr3:10303974 Bma06g00105 Bma-Chr6:1504564 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1077 Blo04g00896 Blo16g00072 . . Bpe15g00463 Bpe13g00425 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1664 . . . Chy07g01268 . . . Bda11g01845 . . . Bma03g00971 Bma06g00105 . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00533 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005786 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57413 PF03126 Plus-3 3.20E-23 No_clan Bma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g00105 Bma_Chr06 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0