Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00115 ATGTCGCATTCTCGGGAGCTAAACAGGGGCTCTACTGTGACGTCCAAGAAAAGCTTCAGAGCAAATGTAAATGGCGGACCTTTTGTCGCTAAGGCTCCCTACAACGACGTTTATGGAGGTCCACCGGAGTTTGGAGCCTCCTCACTCTCTCCTCGCCCCGAGGACTACAGTGAGATTTTTGGAAGTTTTCATGTTTCGCGCGCTTCGTCGATTCCGATATTAGATCTTCCGGAACTGGATGAAAAAGAAGTATTCTTTGATGTCCAAAGCTCTAACTTTGACTACGCTGAGGTTTTCGGAGGTTTCGACTGTCTAGATTTCGCTGCGACTTACGAGGAGTTGACTAAACAATCCAATGAAGGGGATGGTGACTCCTCAGAAGAAGCATGGACCCCTGCAGGGACTGAATCTCTATCGGATGACTCGGATCATTCTTCAAAATTGCAATGCATGTTTAACGGAGATTCTGACCCATCTTTCGATTGCGGCACAGAGTTCAAAATATCATACAATCAAGCCTATCAAAGTGGGAAAGAAGATATGTCAAATGGGATGACACATGTGACCCAGGTAAATGAAGTTCCCGGCTTTACTTATCTGGTTGATGGAGCAGATTTCCGGGGTCAAGACGATGAGAATCAGCCCTTTCATGCAAATGATGATGGATATTTCAATATTGATTTGAGTACGGGACTAAATGAGAATAAACCAGCAAAGAAGAAAGAGTCACAACCTCCTAATGCTATCTATGAAAGACAAAGTCATGAAAATGGTCCTCAAACTGCTAAAGGAAGTGATAAAAGTAGTTCTTGTGTTGATGAAAGTTTTATAACTATATCTGAAATCAACCTTAGAACTGAGCCTTCTCAAGTACCGCCACCTTCTCGGCCACCTCCAATTATAGGTGTGAAAAAGCTCTATTCCACATTGAACTCAAACAGCGATTATGTTTTTCCTGAAGGGATTTCGGACGATAGTTCACCTCCCTTTTTTGATGTAGAGGTAGATGCAAGTTCATCTGCCGCAGCGTCTGCAGCAGCTATGAAAGAAGTAATGGAAAAGGCACGAGCTAAACTCCTCAGTGCGAAAGAACATATGGAGAGGAAGAAGGAAGGAGTACATAACCGTAGCAAACAACATTTCAAATATGATATGAAGGATAAGGAAGGAAGTGTGAGTAAGTTGTTTGAGAGGTCCAATAATGGAAATGATGAGAAAGGGCAGGACGCATGTGAGATTGTTGAAAATGAGATGACATTTTCAGTTACGGATGAAATGAGAAAGGTTACACAAACAAATAAAGAAGTTCAAGTTTCATTAAAAGGAGAAAAACTGTTAAAAGTAGCTCATAAATTTGCAGAGAACAAGTTTAAAGATGATGCCATTGATGACTCAAGAAAACAGAAAGAAGCAGGGGGACTTTTTGAGGTGAAGCCAGATAATTCTAGAAAGGCTACTGAGCTGGTGAAAAATGAAAATATATCTGGAAGGACTGTAAAGACAGAAAACGATATTGTGATTGAAGCACTGGAACAGCTTGGAGAAAACGACAACGAAGTTGATGCTGTTTTAAATGTTCACGGACTCAAAAAAACAAGGGAAGCAGAAGGAAAAAACTGGCAAGAGGACGACAACATGAGATCAAAACCAGCCACAGTACTAAATAGTCAAAGGGAGTATGAGCGGTCGGAAGGAACTCTATGTAATTATGATCTCAAAGAGAATGAGAAAAAGAGTGAAATAACTCATCTGTCAGTAGAGAAGAAGGGAAGTAGAGAAGCTGATAAGGCTGTGAAATATGAAGTGCTGGTAGAAGTTAAGTATAATGACAATGGAGGTGAAGTGGAGCAGACTATTACCAAGGCAAATGGTAATAGAAAAAGCCAAGTGATCAATGGGAGAAATGATAATGATAGTAAACTCAAGGAAATCAGCGTTGTTAGGGAAAATGAATTGGGTGAAATGGAGGGTATCCAACATCTAGAAATGGAGGGAAAACTTACAGAATCCTTTGACATGAGCGAATGTGAGAAAAGGCTGAATATTCATGGACAGAATGAAAATGAGAGGAGTACAGAAGATACTCTTGAGAAGGGATTAGAAGATGATCTTCAGGAGGGAAATGAAGCCAAACCACCCAAGAAACCAAGTGAAAAAGAAGTTGGGAAGAGACTCAAAGATGATGAAGAATATGAGAAGAAACTGCAAGACATCCATGAAAGGTGGGAAAATATATTGACAAAACATAAAAAACATCCCAAGGAAAAAGATTGTAGAAAGGAACTTGAAGAGATTAACCACACAGAACCTAGTGAAATGAAAATCAAGGAAGCAGGTAAGCACGACAAAATTGAAGCCACAGCAGATAATGCTAGCCAATATAAGGAATTTGTAAAAATGTTTGAGGATCACAAGGGAGGAGAACTAAAGAATATAAAATCGGCTGATAGAGCTCAGGTACAAAGTGAAATGGAGCCTAGCGAGGTATGTAATGAAGTATGTGAGGTGGATCATGAATACCAAGCAATGCAACAGCACTGCAAGAATGATCAATGCAGAGAAAGAGTGGAAGCAACTCAAGGGTTCCTTGGTCACAACGAAAGTGGAGATAAAATGGGTGAACACAAAATTAATAAGATACAGTTAGATAGTACTGGCATGATGCATCTGGAGTCTGCTGAAGACGTCAATGCATTCTACAGAGGCAAAGAAGTGTTCATAGACTTAGATTGGCTAGTCAGACCAGAAGACGTCGACAAATCTCTTTCTGTTGATGACAGTGGAAATAAAGATATTGACATAAGCAGCAAAATCAAATATTGTGATAGAGAAACAGATCCAGATGTACCCCTGGTTGCCGAAGACGTAAAGGCATGTGGCATTTCCTACATATTCAAAGTACTTGAAAATGACCAAATTCAAATGAAAGACGAAAAAAATGTGCTTACTCAGGATGAGAGTGAAAAGAAGGGAAAAGAAGTTGGCATAAGCAATGGACATCAGCACTTTGTGAAAATGAACAGTGTGCCCAAAGTAGTCTCCGATCCTGACCACCAAGATAGTAAATCTGATCAGGCCTTGAACCTCAAAAGAAACAAGGAAAAATTTGTATCAACGCATGTATTTAAGGAGAGAGCTGAAAAAGAAAATAAAAGTGAAGCTAATGAGAGTCATGTCTCTGGAGGGAAAGAAAACACCCCAAATTTGGCTTCTGAGGTCAATGCAGGTCAGTTTATTGCAAGGAAAGATAAAATTATCAATGATACACTCTTGGTTGGAGATAGAGAAACTGAAAGGATGAAGAAAAAACCAGAGCTTGAGAATGATCCACTTAAGATGGAAGAAGAGAAGGAAAGGGAAAGGGAGAGAGAAAAGGATAGGATGATTATTAACAAAACCATTCTCAAAGGCAGTAAAGAAAACAAGGAAGGCCATGCAGAAAAGGCTGCAATGGAGAAAGCCATTACTGACGCGCAACGGAAAGCAATGTTGGAGGCTAGAGAAAGACTAGAAAAAGCCTGCACAGAGGCACGGGAAAAGTCTTTATCTGGGAAGGCTGCTTTGGAGGCCAGGGTTAGAGCAGAGCGCGCTGCTGTTGAGAGAGCAAATGCAGAGGCTAGAGAGCGTGCATTCGAAAAGGCAATGGGTGAAAAGTCTGTTTTTGAGTCAAGAGAACGAATAGAGAGATCTTTTTCTGACAAATTATCTGCTTCTTCAAGAGGTACCGTAATAAGACAGAGCTCATCATTTAATGATATGCCAGATCTCCAATTTCAACGCACAGACACTTCCAGTGGCTCAAGATACACTTACTCTTCATCTAATGGTGATGTAAGTGAAGGTGTTAATGTTGAGTCAGCTCAAAGATGTAAAGCTAGGTTGGAGAGACACAGAAGAACAGCAGAACGTGCAGCCAAGGCTCTTGCAGAGAAGAATATGCGTGATATTCTTGCACATAGAGAGCAAGTGGAGAGAAATAGGTTAGCAGAAACGCTGGATGCAGATGTAAGGAGGTGGTCGAGTGGGAAGGAAGGAAACTTGCGTGCCCTGCTATCAACTTTGCAATATATATTATGGCCTGATAGCGGTTGGCAGCCAGTTCCATTAACCGAAGTTATAACAGCTGCTGCTGTAAAGAAAGCTTACAGGAAAGCCACTCTTTGTGTTCATCCTGACAAGTTACAGCAAAGGGGTGCTAGTATTCAGCAGAAATACATCTGCGAAAAGGTTTTTGATCTCCTAAAGGAAGCTTGGAACAAATTCAACTCGGAAGAGCGGTAA 4281 40.85 MSHSRELNRGSTVTSKKSFRANVNGGPFVAKAPYNDVYGGPPEFGASSLSPRPEDYSEIFGSFHVSRASSIPILDLPELDEKEVFFDVQSSNFDYAEVFGGFDCLDFAATYEELTKQSNEGDGDSSEEAWTPAGTESLSDDSDHSSKLQCMFNGDSDPSFDCGTEFKISYNQAYQSGKEDMSNGMTHVTQVNEVPGFTYLVDGADFRGQDDENQPFHANDDGYFNIDLSTGLNENKPAKKKESQPPNAIYERQSHENGPQTAKGSDKSSSCVDESFITISEINLRTEPSQVPPPSRPPPIIGVKKLYSTLNSNSDYVFPEGISDDSSPPFFDVEVDASSSAAASAAAMKEVMEKARAKLLSAKEHMERKKEGVHNRSKQHFKYDMKDKEGSVSKLFERSNNGNDEKGQDACEIVENEMTFSVTDEMRKVTQTNKEVQVSLKGEKLLKVAHKFAENKFKDDAIDDSRKQKEAGGLFEVKPDNSRKATELVKNENISGRTVKTENDIVIEALEQLGENDNEVDAVLNVHGLKKTREAEGKNWQEDDNMRSKPATVLNSQREYERSEGTLCNYDLKENEKKSEITHLSVEKKGSREADKAVKYEVLVEVKYNDNGGEVEQTITKANGNRKSQVINGRNDNDSKLKEISVVRENELGEMEGIQHLEMEGKLTESFDMSECEKRLNIHGQNENERSTEDTLEKGLEDDLQEGNEAKPPKKPSEKEVGKRLKDDEEYEKKLQDIHERWENILTKHKKHPKEKDCRKELEEINHTEPSEMKIKEAGKHDKIEATADNASQYKEFVKMFEDHKGGELKNIKSADRAQVQSEMEPSEVCNEVCEVDHEYQAMQQHCKNDQCRERVEATQGFLGHNESGDKMGEHKINKIQLDSTGMMHLESAEDVNAFYRGKEVFIDLDWLVRPEDVDKSLSVDDSGNKDIDISSKIKYCDRETDPDVPLVAEDVKACGISYIFKVLENDQIQMKDEKNVLTQDESEKKGKEVGISNGHQHFVKMNSVPKVVSDPDHQDSKSDQALNLKRNKEKFVSTHVFKERAEKENKSEANESHVSGGKENTPNLASEVNAGQFIARKDKIINDTLLVGDRETERMKKKPELENDPLKMEEEKEREREREKDRMIINKTILKGSKENKEGHAEKAAMEKAITDAQRKAMLEARERLEKACTEAREKSLSGKAALEARVRAERAAVERANAEARERAFEKAMGEKSVFESRERIERSFSDKLSASSRGTVIRQSSSFNDMPDLQFQRTDTSSGSRYTYSSSNGDVSEGVNVESAQRCKARLERHRRTAERAAKALAEKNMRDILAHREQVERNRLAETLDADVRRWSSGKEGNLRALLSTLQYILWPDSGWQPVPLTEVITAAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSEER 1426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1599957 1605449 - Bma022734.1 Bma06g00115 83617

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00115 1426 ProSiteProfiles dnaJ domain profile. 1362 1426 IPR001623 -
Bma06g00115 1426 Gene3D DnaJ domain 1300 1426 IPR036869 -
Bma06g00115 1426 MobiDBLite consensus disorder prediction 1015 1030 - -
Bma06g00115 1426 Coils Coil 1185 1209 - -
Bma06g00115 1426 MobiDBLite consensus disorder prediction 1043 1058 - -
Bma06g00115 1426 SUPERFAMILY Chaperone J-domain 1280 1425 IPR036869 -
Bma06g00115 1426 MobiDBLite consensus disorder prediction 1097 1128 - -
Bma06g00115 1426 MobiDBLite consensus disorder prediction 1011 1030 - -
Bma06g00115 1426 MobiDBLite consensus disorder prediction 130 150 - -
Bma06g00115 1426 Coils Coil 1284 1326 - -
Bma06g00115 1426 MobiDBLite consensus disorder prediction 116 150 - -
Bma06g00115 1426 MobiDBLite consensus disorder prediction 981 1001 - -
Bma06g00115 1426 PANTHER AUXILIN/CYCLIN G-ASSOCIATED KINASE-RELATED 8 1421 - -
Bma06g00115 1426 MobiDBLite consensus disorder prediction 703 730 - -
Bma06g00115 1426 MobiDBLite consensus disorder prediction 981 996 - -
Bma06g00115 1426 Coils Coil 349 369 - -
Bma06g00115 1426 MobiDBLite consensus disorder prediction 1043 1069 - -
Bma06g00115 1426 MobiDBLite consensus disorder prediction 1245 1284 - -
Bma06g00115 1426 Coils Coil 1160 1180 - -
Bma06g00115 1426 PANTHER AUXILIN, ISOFORM A 8 1421 - -
Bma06g00115 1426 MobiDBLite consensus disorder prediction 1245 1282 - -
Bma06g00115 1426 MobiDBLite consensus disorder prediction 251 271 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00115 - - - zju:107424685 913.679
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma03g00985 Bma06g00115 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00202 Bma-Chr4:1777269 Bma06g00115 Bma-Chr6:1599957 1.29E-34 dispersed
Bma06g00115 Bma-Chr6:1599957 Bma15g00765 Bma-Chr15:15836979 1.21E-56 dispersed
Bma11g00891 Bma-Chr11:33848218 Bma06g00115 Bma-Chr6:1599957 3.85E-29 dispersed
Bma01g02328 Bma-Chr1:80780978 Bma06g00115 Bma-Chr6:1599957 3.64E-26 wgd
Bma03g00985 Bma-Chr3:10546960 Bma06g00115 Bma-Chr6:1599957 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g999 Blo04g00910 Blo16g00053 . . Bpe15g00422 Bpe13g00437 . . . . . Cma07g00477 Car03g00673 Car07g00420 Sed14g1132 Cpe19g00817 Cpe10g00623 Bhi03g01324 Tan03g1999 Cmetu08g1509 . . . . Cla01g01920 . . . Clacu01g2027 Cmu01g1902 . . Cone12ag0778 Cone6ag1638 Cone9ag1558 Lsi01g00666 . . Cme08g00860 . . Bda11g01857 . . . Bma03g00985 Bma06g00115 . . Cmo07g00477 . . . . . . . . . . . . . . . . . . . . . Csa06g03256 Chy02g00633 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004571 1 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g00115 Bma_Chr06 FPKM 38.618057 39.532539 32.915623 36.144043 19.823563 24.127609 21.872581 20.664503 17.732489 15.355385