Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00118 ATGGCAAATGGAAGCAGAGTTGTCTCTGTTTTAGCCTTTTTCTTCTTTGGGTTCATTGGTTTAGCCACATTTCCTGCAGAAGCTGCATTAAAGAGTTACCAGTTTGATATTCAAGTGAAGAATGTGAGTAGATTATGCCATGCAAAACCTATCGTAACAGTAAATGGGAGGTTTCCAGGGCCAACAATCTATGCAAGAGAAGGAGACAGAGTTATCGTCAATGTCACAAACCATGCACAATATAACATCTCTATCCACTGGCATGGATTAAAGCAATACAGAAATGGGTGGGCAGATGGACCAGCTTACATTACACAATGTCCCATTCAAACAGGGCGTAGCTATGCATATGACTTCAACGTGACAGGACAAAGAGGAACCTTATGGTGGCATGCCCATATTCTTTGGCTGAGGGCCACAGTTTATGGAGCAATTGTAATCATGCCTCAACAAGGAACACCATTTCCTTTCCCTCAGCCAAATAGAGAGTTCGAACTTATATTAGGAGAATGGTGGAATAATGATGTGGAAGAAATCGAGAAGCAAGGAAACATGATGGGGTTGCCACCAAACATGTCAGATGCACATACAATCAATGGGAAGCCAGGACCATTGTTTCCATGCTCTGAAAAACACACATACGCTGTGGAGGTGGAACGAGGAAAGACATACCTTCTGAGGATCATCAATGCTGCTCTCAATGATGAGCTTTTCTTTGCCATTGCGGGCCATAACATGACAGTTGTGGAGGTCGATGCAGTTTATACAAAACCAGTCACAACGCAAGCTATTCTAATTGCACCAGGCCAGACCACAAGCGTCCTACTTCAAGCAAACCAAGCTCCAAACAGATATTTCATGGCTACAAGGCCTTTCCTTGATGTTCCACTTGCCATTGATAATAAAACAGCCACTTCCATTCTTCAATACAAAGGCATTCCAAACACTGTTTTTCCTATCCTTCCTCAATTACCTGCCCCTAACGACACAGATTTCGCTTTAGGCTACAACAAGAAGCTCAAGAGTTTAAACTCACCACAGTTTCCAGCTAATGTTCCTCTTAAGGTAGATCGAAAGCTCTTTTACACCATCGGTTTAGGCATGAATGCTTGCCCCACATGCTTGAATGGAACCAGATTGGTTGCTTCTTTGAACAACATCTCCTTTGTGATGCCTAGTGTTGGTCTTCTTCAAGCTCACTATTTCAACATCAAAAGAGTATTCAGAACTGATTTCCCTGACAAACCTATGACGCCTTTCAACTACACTGGTGCACCACTCAGTGCTAATCTTGGCACTACCGTCGGCACAAGGCTGAGCAAGCTTGCATTTAATTCTACTGTTGAACTGGTCCTTCAAGATACCAATCTTCTGACAGTAGAGTCACACCCATTTCATCTCCATGGCTACAACTTCTTCGTCATTGGGACGGGAAATGGAAATTTTGATCCTGTCAAAGACCCACTAACGTATAACTTGGTCGATCCCGTTGAGAGAAATACAGTTGGAGTTCCCACTGGAGGCTGGACAGCCATTCGATTTCAGGCCAATAATCCAGACTTTGTCCTTGGACTCTCACAGAATCATGGCGACGATTTCAATGTCATCCTCCATTCCCACGCTAACCTTTCCGAGACTGCGCCGTGCAAATCGCGAATTGTTGGTGGCAGGAATTCAGGTATGGCATTTGCGAGTGGGAGCAAAGAATCTGCTACTTTAGGAGTGCGAGTGACTGAAGGTGAAGGAAATCTACCAAAGGTTGTACTCACTTCCTCCAGCGGTAGTGAGGCTGATATATACTTATATGGAGGATGCATTACATCTTGGAAAGTTGGAAATGGCAAGGATTTGCTGTTTGTCCGCCCCGATGCTGTCTTCAACAAGCAAAAACCAATCAGTGGAGGCATTCCCCATTGTTTCCCGCAGTTCGGACCTGGCCCTATGCAGCAGCATGGATTTGCCAGAAACGTTGATTGGTCTCTCCTTGACTCTGAAAATGTACAAGGTGACCCAGTTGTAACTCTGGAACTCAAGGATAGCTCTTATAGTCGTTCCATGTGGGATTTCAGTTTCCAAGTTCTATACAAGATTATTCTGAGTGAGAAGACCCTTGCCACCGAACTAATCATCACAAACACCGACAAGAAGCCGTTCTCTTTTACTACCGCCTTGCACACATATTTTCGAGCTTCTGTAGGAGGGGCAGTAGTTAAAGGCCTGAAAGGCTGCAAAACGCTAAATAAAGACCCAGATCCCAAAAATCCGGTGGAGAATATTGAAGAAAGAAATGTTGTCGATTTTCCCGGTTTCGTGGATTGTGTATATCTCGATGCCCCTAATGAGTTGAAGTTGAGTAACGGCTTGGGCGATACGATATCCATTAGGAACACAAATTGGTCGGATGCTGTTCTGTGGAATCCACATCTACTATGGAAGCTTGCTACAAGGATTTTGTTTGCGTCGAGAATGCCAAGATTGGAGAGATAG 2487 44.19 MANGSRVVSVLAFFFFGFIGLATFPAEAALKSYQFDIQVKNVSRLCHAKPIVTVNGRFPGPTIYAREGDRVIVNVTNHAQYNISIHWHGLKQYRNGWADGPAYITQCPIQTGRSYAYDFNVTGQRGTLWWHAHILWLRATVYGAIVIMPQQGTPFPFPQPNREFELILGEWWNNDVEEIEKQGNMMGLPPNMSDAHTINGKPGPLFPCSEKHTYAVEVERGKTYLLRIINAALNDELFFAIAGHNMTVVEVDAVYTKPVTTQAILIAPGQTTSVLLQANQAPNRYFMATRPFLDVPLAIDNKTATSILQYKGIPNTVFPILPQLPAPNDTDFALGYNKKLKSLNSPQFPANVPLKVDRKLFYTIGLGMNACPTCLNGTRLVASLNNISFVMPSVGLLQAHYFNIKRVFRTDFPDKPMTPFNYTGAPLSANLGTTVGTRLSKLAFNSTVELVLQDTNLLTVESHPFHLHGYNFFVIGTGNGNFDPVKDPLTYNLVDPVERNTVGVPTGGWTAIRFQANNPDFVLGLSQNHGDDFNVILHSHANLSETAPCKSRIVGGRNSGMAFASGSKESATLGVRVTEGEGNLPKVVLTSSSGSEADIYLYGGCITSWKVGNGKDLLFVRPDAVFNKQKPISGGIPHCFPQFGPGPMQQHGFARNVDWSLLDSENVQGDPVVTLELKDSSYSRSMWDFSFQVLYKIILSEKTLATELIITNTDKKPFSFTTALHTYFRASVGGAVVKGLKGCKTLNKDPDPKNPVENIEERNVVDFPGFVDCVYLDAPNELKLSNGLGDTISIRNTNWSDAVLWNPHLLWKLATRILFASRMPRLER 828
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1615449 1622132 - Bma031267 Bma06g00118 83620

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00118 828 SUPERFAMILY Cupredoxins 353 540 IPR008972 -
Bma06g00118 828 CDD CuRO_2_LCC_plant 166 310 IPR034285 -
Bma06g00118 828 PANTHER LACCASE 10 520 - -
Bma06g00118 828 Pfam Multicopper oxidase 413 521 IPR011706 GO:0005507|GO:0016491
Bma06g00118 828 Gene3D - 582 812 IPR014718 GO:0030246
Bma06g00118 828 SUPERFAMILY Cupredoxins 157 334 IPR008972 -
Bma06g00118 828 Pfam Multicopper oxidase 166 312 IPR001117 -
Bma06g00118 828 CDD D-hex-6-P-epi_like 587 808 IPR025532 -
Bma06g00118 828 PANTHER MULTI-COPPER OXIDASE 10 520 IPR045087 -
Bma06g00118 828 TIGRFAM laccase: laccase 29 520 IPR017761 GO:0046274|GO:0048046|GO:0052716
Bma06g00118 828 Pfam Multicopper oxidase 37 151 IPR011707 GO:0005507
Bma06g00118 828 SUPERFAMILY Cupredoxins 24 174 IPR008972 -
Bma06g00118 828 Gene3D - 370 546 IPR008972 -
Bma06g00118 828 Gene3D - 21 149 IPR008972 -
Bma06g00118 828 CDD CuRO_1_LCC_plant 33 149 IPR034288 GO:0005507
Bma06g00118 828 Pfam Aldose 1-epimerase 586 809 IPR008183 GO:0005975|GO:0016853
Bma06g00118 828 SUPERFAMILY Galactose mutarotase-like 585 808 IPR011013 GO:0003824|GO:0005975|GO:0030246
Bma06g00118 828 Gene3D - 161 345 IPR008972 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00118 K05909 E1.10.3.2; laccase [EC:1.10.3.2] - csv:101218482 917.916
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00118 Bma-Chr6:1615449 Bma14g00537 Bma-Chr14:5866051 0 dispersed
Bma01g00497 Bma-Chr1:4071838 Bma06g00118 Bma-Chr6:1615449 3.62E-07 transposed
Bma02g01078 Bma-Chr2:52499633 Bma06g00118 Bma-Chr6:1615449 1.44E-21 transposed
Bma05g00849 Bma-Chr5:46035904 Bma06g00118 Bma-Chr6:1615449 4.99E-28 transposed
Bma11g00695 Bma-Chr11:16330176 Bma06g00118 Bma-Chr6:1615449 2.00E-40 transposed
Bma14g01478 Bma-Chr14:29926375 Bma06g00118 Bma-Chr6:1615449 5.56E-21 transposed
Bma03g00987 Bma-Chr3:10580913 Bma06g00118 Bma-Chr6:1615449 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g989 . Blo16g00050 . . . Bpe13g00440 . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0817 . . . . . Chy07g01232 . . . Bda11g01861 . . . . Bma06g00118 . . . . . . . . Cpe14g00477 . . . . . . . . . . . . . . . Csa04g00577 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000013 13 15 12 14 11 15 17 15 13 14 14 15 22 14 16 19 15 33 6 15 14 14 15 20 18 14 13 15 19 34 484
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g00118 Bma_Chr06 FPKM 9.104608 11.427913 6.22276 5.555947 17.127428 15.16224 15.138517 5.798337 5.525377 4.917319