Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00119 ATGGGAACTGATGTAACTGAAGCTCATGGACAAGTGCCAAATCCCTCCTCCTTCAAGGTTCATCGGCTAATGTGCATGGAACTAATGAAATTACTCGATCGAGTGTTGACAATATTTCCAGAAATAGAAGCAGCGAGGCCGAGATGCCCATCGGGAATTCAGGCGCTCTGCTCATTGAACTTCGCAGTAGACAAAGCAACGAAGTTACTTCAGTCTTGCCGCGAATCCAGTAAACTTTATCTGGCAACGACAGGAGATACAATTGTCAGAAGATTTCAGAGATCAAGTGAATCTTTGGAGAAAAGTTTATGCGATATTAAAGGCATGGTCCCCGTTTCGTTAGAATCGGAGATCAATCAAATAGCAAATGATCTCAGGAAGGCAACATATCTCTTGGACTCATCGGAAGAAGAAGCAGGGCAGGCTTTGCAGCAGTTGTTGAGAAAAATCGATTCTACTTCGGCTTCTGTGGAGGATGCTTTTCGAACTGCAGCTGTGAAGCTTAACATCACTTCTCAGAAGGAAATCCTTATTGAAAAGAGATCCATCAAGAAACTACTTGGGAATGTGGATGCCAAGGATCAGAAGAGAAAAAATATATTGATGTACCTTTATAATCTGCTGAACAAATACAGAGATTCTGTCGTTGCGGAGAACCCCGAGAGGGTCGATGAAACGGTCATTAACTCAGTTCCAGTTGAGAATTCGTTTAATGGAGCTTTGAATTGTCCATCTATGGAAGGTAAACCACATGAAGCATGCAGAGAAAATGTCTCTGAAGCTATAACACTTAGCAGAGCTGCTCCTCCTGCAGAATATAGATGCCCATTATCCTCGGGAATAATGTACGACCCTGTCATCATTGCATCTGGACAAACGTATGAGAGGTTTTCGATACAGAAGTGGTTTGATGAGGGTCATGATTCATGCCCAAAAACTGGAATGAAGTTGTCAAATCAATTGATGACCCCGAACCTTTCCTTGAAGGATTTAATATCGAGATGGTGCTCAAATTGTGGAGTCGCCGTTTCAGATCCGAGTATCAAACCAGAAACTAAATCATGGGAATATTCATCCAACTCTATTGCTAGCTTTGGAAGTTCCATGAATGATTTTCATCTGCATATGGATTTTAGCAACATCTCGATGGGATCGATTGATGCGAGTTGTTATTCATGTTCATTACCTCCTAAACCTGCTATTGGTTTAAGTTTGATGTCATTGCAGACTAAGAATGATTGTTCCACACCCCAGTCTGATGCAAATCTACACGAAACGGATTTTGCGTTCCTGTCTAATCTTAATGAGCTTGAATGGAAGTTACAATGCAAAGTCATCGAAGATTTGAACAATAGCACGAAGGAGAATGATCGGGTCTGTACTGGGTTGTCAGGAAATGTGGTCGAAGTGCTCACAAGATTTTTGAGTGATGCACAATCTCGACAGGACATAAGAGCTGAGAAAGATGGATCTGACTTATTTCTGACATTCTTGAGTAAAAACAGGCAAGGTGTATTGAATATACGCGAAGAAACATTGAGTTTTTTGGCCGGTTTGCTCCGTTCAGAAGTAACGGAAGAAGTTCTTTCTAGCTTAGAAGTGCTGTCTTGCCAGCAACAGTGCATATCCAAGTTTGTGGCTCCTGGAGTTCTTGACTCTATCCTAGAAATCATCGACTCTCCCATCAGAATTTTGAAGGAAAAAGCTGTTAAAATTCTATCCACTCTATCTTCGAGTTATGTCGTTGGCTCCCAAATCGTTTCTCTCGGGTGCATACCAAAATTACTTCCTTTGCTCAACGATGATGATCTTCCGTGCAACTGTATTCTTCTACTGAAAAAATTATGCGACTTTGATGAGGGTAGAATTTCTGTAGTCGAAACAAAAGGATGTCTCGCTTCTGTTGCACAACTTCTCGAGTCGGACAGTCTAGAGAAGCAAGAACATGCAGTTATGATTCTCCTTTCTTTATGTTCTCAAAAAGTTGAATATTGTGAATTGGTCATGGGCCTCACGGATACTGGCATAATCCCTTCCCTTGTAACCATATCTGTCAATGGAAGTAAGAAAGGTCGGGTGGGAGCATTAGAGCTGCTTCGGCTTTTAAGAGAGGCCTGCGAGGATCGAGCATCTCAGAAACCCAAACAGAATTCCTCAAGAAACGGCAGCAACCGCCATGATGCGGACGAAAAGAAAACACCATCAAAGTTATTTGGATTCTTCAGAAAGAAATAA 2235 41.79 MGTDVTEAHGQVPNPSSFKVHRLMCMELMKLLDRVLTIFPEIEAARPRCPSGIQALCSLNFAVDKATKLLQSCRESSKLYLATTGDTIVRRFQRSSESLEKSLCDIKGMVPVSLESEINQIANDLRKATYLLDSSEEEAGQALQQLLRKIDSTSASVEDAFRTAAVKLNITSQKEILIEKRSIKKLLGNVDAKDQKRKNILMYLYNLLNKYRDSVVAENPERVDETVINSVPVENSFNGALNCPSMEGKPHEACRENVSEAITLSRAAPPAEYRCPLSSGIMYDPVIIASGQTYERFSIQKWFDEGHDSCPKTGMKLSNQLMTPNLSLKDLISRWCSNCGVAVSDPSIKPETKSWEYSSNSIASFGSSMNDFHLHMDFSNISMGSIDASCYSCSLPPKPAIGLSLMSLQTKNDCSTPQSDANLHETDFAFLSNLNELEWKLQCKVIEDLNNSTKENDRVCTGLSGNVVEVLTRFLSDAQSRQDIRAEKDGSDLFLTFLSKNRQGVLNIREETLSFLAGLLRSEVTEEVLSSLEVLSCQQQCISKFVAPGVLDSILEIIDSPIRILKEKAVKILSTLSSSYVVGSQIVSLGCIPKLLPLLNDDDLPCNCILLLKKLCDFDEGRISVVETKGCLASVAQLLESDSLEKQEHAVMILLSLCSQKVEYCELVMGLTDTGIIPSLVTISVNGSKKGRVGALELLRLLREACEDRASQKPKQNSSRNGSNRHDADEKKTPSKLFGFFRKK 744
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1626872 1629973 - Bma022737.3 Bma06g00119 83621

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00119 744 SUPERFAMILY RING/U-box 262 345 - -
Bma06g00119 744 MobiDBLite consensus disorder prediction 708 744 - -
Bma06g00119 744 CDD RING-Ubox_PUB 273 314 IPR045210 -
Bma06g00119 744 ProSiteProfiles U-box domain profile. 268 342 IPR003613 GO:0004842|GO:0016567
Bma06g00119 744 Pfam U-box domain 270 337 IPR003613 GO:0004842|GO:0016567
Bma06g00119 744 MobiDBLite consensus disorder prediction 708 737 - -
Bma06g00119 744 PANTHER U BOX DOMAIN-CONTAINING 24 721 - -
Bma06g00119 744 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 5 24 721 - -
Bma06g00119 744 Gene3D - 430 715 IPR011989 -
Bma06g00119 744 SMART Ubox_2 272 335 IPR003613 GO:0004842|GO:0016567
Bma06g00119 744 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 266 342 IPR013083 -
Bma06g00119 744 SUPERFAMILY ARM repeat 502 705 IPR016024 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00119 - - - qsu:111998800 668.692
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00018 Bma-Chr1:310878 Bma06g00119 Bma-Chr6:1626872 6.05E-79 dispersed
Bma06g00119 Bma-Chr6:1626872 Bma06g00574 Bma-Chr6:30839405 2.75E-88 dispersed
Bma01g02326 Bma-Chr1:80762076 Bma06g00119 Bma-Chr6:1626872 1.29E-72 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g984 Blo04g00915 Blo16g00047 . . . Bpe13g00442 . . . Cmo16g00674 . . . . . . . . . . . . . . . . . . . . . Cone8ag0814 Cone12ag0712 Cone6ag1628 Cone9ag1553 . . Chy07g01240 . . . Bda11g01864 . . . . Bma06g00119 . . . Cma16g00618 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003260 2 8 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 0 1 1 1 1 1 5 2 1 50
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g00119 Bma_Chr06 FPKM 4.20626 4.247704 3.333197 3.354266 6.719324 4.73227 6.993263 5.250526 4.849801 4.702071