Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00128 ATGGATGCTGATAACAAGGTAAAGATTGAAGGTGCTATCGATTCCCCGACGTCGGTGCTTGAAGACGAGGATTTAGGCAACCTAGCGAATGGAGTCAAACAGGAGGGCGAGATACTGCAGGATGCAAAAAATGGGGATTGCATTCTTATATCAAGAGAAATGGAAGAGGAGGAAGGGAACTTGCTAAAAGCTCGGATAAAGGAAGAAGAGGTTGAGCTGGAAACGAAGCCAGCTGTTACAGCACATTTGGATGAAAGTCAGTTTACAAAATTGGATGAGCTCTTAACTCAAACAAAGTTATATTCAGAGTTTCTACTGGAGAAAATGGACGACATTACATTTAACGGAGTGGAGATGGAAGCCGAACCTGTTGAGAAGAAAAAAGGCCGCGGCTCTAAAAGAAAAGCTTCTGCAAACTACAATAATAGGAAAGCCAAGAGGGCAGTTGCAGCAATGCTCACTAGATCTCAAGAAAGTGGGAAAGATGAAGATGCAAATCTTACTCTCGAAGAACAAGTTCAAAAGGAGCAGAGAGAACTGGTACCGCTGCTGACTGGTGGACAATTGAAGTCATATCAACTCAAAGGTGTAAAATGGTTGATCTCATTGTGGCAAAATGGATTAAACGGGATTCTTGCTGATCAAATGGGGCTTGGAAAGACAATTCAGACCATCGGATTCCTTGCACATTTGAAAGGGAAAGGATTGGATGGACCGTACTTAGTGATTGCTCCTCTTTCTACTCTGTCCAATTGGGTTAATGAGATTTCAAGGTTTGTGCCGTTAATAAATGCTATTATCTATCACGGTGATAAGAAACAAAGGAACGAGATACGTAAAAAGTACATGCCAAGAACAATAGGCCGGAAATTCCCCATAGTAGTAACATCTTATGAGGTTGCTATGAGCGATGCAAGAAGATTTTTGAGACATTATGACTGGAAATATCTCGTCGTAGATGAGGGACACAGATTGAAAAACTCAAAGTGCAAACTTTTGAGGGAGTTGAAACTTTTATCTGTTGAAAATAAGCTTTTATTAACTGGGACGCCGCTGCAGAATAATCTAGCAGAGCTTTGGTCGTTGTTGAACTTTATCTTGCCAGATATTTTCTCATCTCATGAAGAATTTGAGTCGTGGTTTGATCTCTCGGGAAAATACAGCAATGAAGAGAGAGAAGAATTGGTAGAGAAGCAAAAAAGTCAGGTTGTTGCAAAACTACATGCAATATTGCGTCCATTTCTACTCCGAAGAATAAAATCAGACGTGGAAAACATGCTTCCTGGAAAGAAAGAGATTATAATCTATGCCAACTTAACAGAATATCAGAAGAATTTTCAAAACCATTTAATAAATAGAAGTTTGGAAGAGCATCTCACGGAGAAGGCATCTTCTGGACATAGTGTGAGAAAAAAGCTGAACAATTTGATGATCCAACTTCGGAAGAATTGCAACCATCCTGACCTTTTAGAATCTGATTTTGATCATTCTTACACATATCCACCTGTGGAGCAAATAGTTGAACAATGTGGTAAATTTCATTTGCTGGAGAGATTGTTGTCACGCTTAATTGCCCACAACCATAAAATCCTTATCTTTTCCCAATGGACTAAGATTTTGGACATCATGGATTACTACTTTAGTGAAAAAGGATTCGAAGTTTGTAGAATAGACGGCAGCGTGAAGCTAGATGAAAGGAGGAGACAAATTCAGGAGTTCAATGATGTGAACAGCAATTATAGAATTTTTCTTCTAAGCACCCGAGCTGGTGGACTGGGAATAAATCTTACAGCTGCAGATACTTGTATTCTCTACGACAGTGATTGGAATCCTCAAATGGATTTGCAGGCCATGGATAGGTGTCACAGGATTGGTCAAACCAAGCCCGTTCATGTTTATAGGCTTGCAACTGCTCAATCAGTAGAGGGACGCATTCTAAAACGAGCATATAGTAAGTTGAAACTTGAGCATGTAGTAATTGGGAAAGGACAGTTTCACCAAGAACGAACCAAATCAAACTCATGTGATATTACTGAGGAAGAAGAGCTGTTGGCACTGCTGAGGGAGGAAGAAAATGCCGAAGACAAGATGATACAAACAGACATTAGCGATGAAGACTTGGAACGGCTAATGGATCGGTCAGATCTGGCAGTTGGTTCGGCTGCGGCTGATGCTACTGCTCCAAATGTGGAAGAGAAGTGCAATGGTGGTTGGCTTCCTCTGAAAGGGACCAGGTTGGGAAGTAGTGATACCAACGGCAACTGGGGGAGTGCTGTCTACAGTCAACAGCTGAGTTGGAGGTGCTTGTTTGAACTGTATTTATTTATATTGTCACGGAATTGTGAATGTTGGTTGGCTTTTTTGTGA 2367 40.9 MDADNKVKIEGAIDSPTSVLEDEDLGNLANGVKQEGEILQDAKNGDCILISREMEEEEGNLLKARIKEEEVELETKPAVTAHLDESQFTKLDELLTQTKLYSEFLLEKMDDITFNGVEMEAEPVEKKKGRGSKRKASANYNNRKAKRAVAAMLTRSQESGKDEDANLTLEEQVQKEQRELVPLLTGGQLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFLAHLKGKGLDGPYLVIAPLSTLSNWVNEISRFVPLINAIIYHGDKKQRNEIRKKYMPRTIGRKFPIVVTSYEVAMSDARRFLRHYDWKYLVVDEGHRLKNSKCKLLRELKLLSVENKLLLTGTPLQNNLAELWSLLNFILPDIFSSHEEFESWFDLSGKYSNEEREELVEKQKSQVVAKLHAILRPFLLRRIKSDVENMLPGKKEIIIYANLTEYQKNFQNHLINRSLEEHLTEKASSGHSVRKKLNNLMIQLRKNCNHPDLLESDFDHSYTYPPVEQIVEQCGKFHLLERLLSRLIAHNHKILIFSQWTKILDIMDYYFSEKGFEVCRIDGSVKLDERRRQIQEFNDVNSNYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSVEGRILKRAYSKLKLEHVVIGKGQFHQERTKSNSCDITEEEELLALLREEENAEDKMIQTDISDEDLERLMDRSDLAVGSAAADATAPNVEEKCNGGWLPLKGTRLGSSDTNGNWGSAVYSQQLSWRCLFELYLFILSRNCECWLAFL 788
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1722979 1728153 - Bma022746.1 Bma06g00128 83630

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00128 788 Coils Coil 52 74 - -
Bma06g00128 788 CDD SF2_C_SNF 501 635 - -
Bma06g00128 788 SMART helicmild6 541 625 IPR001650 -
Bma06g00128 788 PANTHER SNF2/RAD54 HELICASE FAMILY 2 738 - -
Bma06g00128 788 Pfam Helicase conserved C-terminal domain 515 625 IPR001650 -
Bma06g00128 788 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 420 710 IPR027417 -
Bma06g00128 788 PANTHER ATP-DEPENDENT DNA HELICASE DDM1-LIKE ISOFORM X1 2 738 - -
Bma06g00128 788 Gene3D - 190 419 IPR038718 -
Bma06g00128 788 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 201 369 IPR014001 -
Bma06g00128 788 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 515 708 IPR001650 -
Bma06g00128 788 SMART ultradead3 185 380 IPR014001 -
Bma06g00128 788 Gene3D - 424 725 IPR027417 -
Bma06g00128 788 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 161 418 IPR027417 -
Bma06g00128 788 Pfam SNF2-related domain 192 489 IPR000330 GO:0005524|GO:0140658
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00128 K19001 HELLS, DDM1; ATP-dependent DNA helicase - csv:101214753 1127.46
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma03g00992 Bma06g00128 BCT
Bma06g00128 Bma12g00977 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00128 Bma-Chr6:1722979 Bma07g00277 Bma-Chr7:3445040 2.71E-119 dispersed
Bma02g00574 Bma-Chr2:12203293 Bma06g00128 Bma-Chr6:1722979 5.92E-61 transposed
Bma02g00875 Bma-Chr2:46932066 Bma06g00128 Bma-Chr6:1722979 3.84E-107 transposed
Bma04g00471 Bma-Chr4:3957352 Bma06g00128 Bma-Chr6:1722979 3.20E-44 transposed
Bma07g00362 Bma-Chr7:4507664 Bma06g00128 Bma-Chr6:1722979 5.11E-11 transposed
Bma10g00219 Bma-Chr10:1995174 Bma06g00128 Bma-Chr6:1722979 2.78E-42 transposed
Bma13g00729 Bma-Chr13:21489168 Bma06g00128 Bma-Chr6:1722979 2.17E-75 transposed
Bma15g00017 Bma-Chr15:228920 Bma06g00128 Bma-Chr6:1722979 2.33E-24 transposed
Bma03g00992 Bma-Chr3:10721657 Bma06g00128 Bma-Chr6:1722979 7.39E-60 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g955 Blo04g00920 Blo16g00039 . . Bpe15g00433 Bpe13g00452 . . Cmo04g00837 Cmo16g00712 . . . . . . . . . . . . . . . . . . . . . Cone8ag0805 . . . . . Chy07g01291 . . . Bda11g01874 . . . Bma03g00992 Bma06g00128 . . . Cma16g00655 . . . . Cpe14g00559 . . . . . . . Cla07g00866 Cam07g0939 Cec07g1004 Cco07g0982 Clacu07g0912 Cmu07g0912 Cre07g1283 . Csa04g00510 . .
Vvi17g621 . . . . . . Bma06g00128 Bma12g00977 . . Cma10g00160 . Car10g00202 . . . . Bhi02g00275 . . . . . . . . . . . . . . . . . . . . . . Blo15g00326 . . Bpe07g00767 . . . . . . . . . . . Cpe18g00774 . . . . . . . . . . . . . . . . Chy02g02461 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009588 2 0 2 2 2 1 2 1 1 1 1 1 1 1 1 2 1 1 1 1 1 0 1 1 1 0 1 1 1 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57417 PF00176 SNF2_N 3.10E-66 CL0023 Bma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g00128 Bma_Chr06 FPKM 7.253002 8.835984 10.047697 10.658216 23.685556 23.633385 24.610184 7.219764 7.610186 7.292134