Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00130 ATGAACGATCAAACTGAGTATCAGAGGGAAGCTATTGCAGAGTTGTACAACCGAAGATCTACCCTGTTGCCATCTCAACAAGGAGGAGCAGAAGCGGTGAAGCCAAAACGACGACGAAGGAAAGTGAGAGGAGGGGGAGGAGAAGAAGGGTCGGGAAAAAAGAGGAAGCTGAGTGCGGAGCAAGCGAATTTTCTGGAAATGAACTTCGGGAACGAACACAAACTGGAGTCGGAAAGGAAAGATCGGTTAGCTATGAAACTGGGTCTTGATCCTCGACAAGTGGCTGTTTGGTTTCAGAATCGAAGGGCGCGGTGGAAGAACAAGAAACTGGAGGAAGAATACTCCGTTTTGAAGAATGCTCATGGATCTGCTCTCCTTGAGAAACGCCGTCTTGAATCGGAGGTAATGAAGCTGAAAGAGCAAGTGGCAGAAGCGGAGAAGGAGATGCAAAGGCTGTGTAATGTTGTGAGTGGGAAGAATGGAGGTTCAAGCAACAGTCCAAGCTCGTCGCTCTCAGTGGAAGCCCTGGAAGAAGCCGTAGCCTTAGGGGAGTTCGGGGTGGAAGGCTTTGAAGACGTCTTCTACATGCCTGTACAGAAGAAGAACAGTTGCAATCATCATCTCTACATTTGA 633 48.66 MNDQTEYQREAIAELYNRRSTLLPSQQGGAEAVKPKRRRRKVRGGGGEEGSGKKRKLSAEQANFLEMNFGNEHKLESERKDRLAMKLGLDPRQVAVWFQNRRARWKNKKLEEEYSVLKNAHGSALLEKRRLESEVMKLKEQVAEAEKEMQRLCNVVSGKNGGSSNSPSSSLSVEALEEAVALGEFGVEGFEDVFYMPVQKKNSCNHHLYI 210
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1738339 1739130 - Bma022748.1 Bma06g00130 83632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00130 210 Gene3D - 45 115 - -
Bma06g00130 210 MobiDBLite consensus disorder prediction 42 57 - -
Bma06g00130 210 SUPERFAMILY Homeodomain-like 53 117 IPR009057 -
Bma06g00130 210 SMART HOX_1 51 112 IPR001356 GO:0003677
Bma06g00130 210 Pfam Homeodomain 53 107 IPR001356 GO:0003677
Bma06g00130 210 PRINTS Lambda-repressor HTH signature 79 88 IPR000047 GO:0003677
Bma06g00130 210 PRINTS Lambda-repressor HTH signature 88 104 IPR000047 GO:0003677
Bma06g00130 210 Coils Coil 100 155 - -
Bma06g00130 210 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 11 200 IPR045224 GO:0003700
Bma06g00130 210 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-40-LIKE 11 200 - -
Bma06g00130 210 ProSitePatterns 'Homeobox' domain signature. 83 106 IPR017970 GO:0000981|GO:0006355
Bma06g00130 210 ProSiteProfiles 'Homeobox' domain profile. 48 108 IPR001356 GO:0003677
Bma06g00130 210 CDD homeodomain 53 109 IPR001356 GO:0003677
Bma06g00130 210 MobiDBLite consensus disorder prediction 18 57 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00130 Bma-Chr6:1738339 Bma14g01528 Bma-Chr14:30830161 2.65E-26 dispersed
Bma06g00130 Bma-Chr6:1738339 Bma10g00067 Bma-Chr10:622428 6.80E-26 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57418 PF00046 Homeodomain 5.80E-17 CL0123 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00130 K09338 - csin:114281220 191.43