Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00131 ATGAACTCATCCACACAGTTTATTTCCTCAATAAGGATGGATGTATGCGAACCAATGCACCACATTGGCATGTGGGGAGAAAACTTCACTACCCCTCCCACAATCATCATCGAACCCGGCTCAAAATTAGATAATCAGGTCACAAAATTTTGGTTAAATCGTTCACGGTCGTGCAATCGATACTCATATGACCTTTTTGTTATTTGCTGTATTCAGTCAGACGATGCTTCATTTGGATCACTCGGACATCCTAAACCCGTTGACAAGGTGAAGTTTCTGCATCAAGTAAAAAGAAGTCTTGCACAAAATCGAGAGGCAGCTCGTAAAAGCCGTCTGCGGAAAAAGGCCTATATTCATCAGTTAGAAACAAGTCGTTCGAAGCTGATTCAATTGGAGCAGGAGCTTGATAAAGCAAGACAACAAGTACGAAACCAATTAGCTTTTCAGGGTCTCTATGTTGGCTGCAGACTTGATTCCATCATTATTAATGACACTTACTGTGTAGGTGTCACGACATTTGAGACGGAGTATGGACAGTGGGTGGAAGAGCAAAACAGGCAGATATGTGAATTTAGGACAGCCCTTCCTACAGATATAACCGATTTAGAGCTGCGAATAATGGTGGAAAATGGGATGCGGCATTATTTCGATCTATTCCGCATGAAAGCAAGAGCAGCAAAGGCTGATGTTTTCTATGTCATGAATGGCATGTGGAAAACTTCAACCGAAAGACTTTTCTTGTGGATCGGTGGTTCTCGTCCTTCCGAGCTTCTCGAGATACTCGCTCCTCAGCTCGATACGTTAACCGAACAGCAAGTTGTTGATGTTCACAACCTTCAAAGGTCTTGTAAGCAGGCCGAAGAAGCTCTTCTGCAAGGCATGGAAAAACTCCGTCAGGCTCTCATTGACGTAGTGGCTGGCCAACTAGGTGAAGGGAGTCATCCTCTTCGGACGGAAACTGCAATGGAGAGGCTACAAGATCTAGTTAGCTTCGTTAATCAGGCTGACCATCTACGGCAAGAATCGTTGCAGCAAATGTACAAAATCCTAACGACGCGGCAGTCTGCTCAGGGGCTGCTTGTTTTGGGAGAGTATTCCCAACGTCTTCAAGCATTAAGTTCACTTTCATCCAATCGACCTCACAACTCCACCTAG 1155 44.59 MNSSTQFISSIRMDVCEPMHHIGMWGENFTTPPTIIIEPGSKLDNQVTKFWLNRSRSCNRYSYDLFVICCIQSDDASFGSLGHPKPVDKVKFLHQVKRSLAQNREAARKSRLRKKAYIHQLETSRSKLIQLEQELDKARQQVRNQLAFQGLYVGCRLDSIIINDTYCVGVTTFETEYGQWVEEQNRQICEFRTALPTDITDLELRIMVENGMRHYFDLFRMKARAAKADVFYVMNGMWKTSTERLFLWIGGSRPSELLEILAPQLDTLTEQQVVDVHNLQRSCKQAEEALLQGMEKLRQALIDVVAGQLGEGSHPLRTETAMERLQDLVSFVNQADHLRQESLQQMYKILTTRQSAQGLLVLGEYSQRLQALSSLSSNRPHNST 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1756413 1758058 - Bma022749.1 Bma06g00131 83633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00131 384 Coils Coil 114 148 - -
Bma06g00131 384 SUPERFAMILY Leucine zipper domain 97 147 IPR046347 GO:0003700|GO:0006355
Bma06g00131 384 PANTHER TRANSCRIPTION FACTOR TGA1 1 382 - -
Bma06g00131 384 SMART brlzneu 90 155 IPR004827 GO:0003700|GO:0006355
Bma06g00131 384 ProSiteProfiles DOG1 domain profile. 170 379 IPR025422 GO:0006351|GO:0043565
Bma06g00131 384 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 98 113 IPR004827 GO:0003700|GO:0006355
Bma06g00131 384 Pfam bZIP transcription factor 97 143 IPR004827 GO:0003700|GO:0006355
Bma06g00131 384 Pfam Seed dormancy control 187 262 IPR025422 GO:0006351|GO:0043565
Bma06g00131 384 Gene3D - 95 148 - -
Bma06g00131 384 PANTHER TRANSCRIPTION FACTOR TGA9 1 382 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01455 Bma-Chr1:26183811 Bma06g00131 Bma-Chr6:1756413 1.15E-10 dispersed
Bma06g00131 Bma-Chr6:1756413 Bma10g00236 Bma-Chr10:2162224 2.06E-85 dispersed
Bma06g00131 Bma-Chr6:1756413 Bma03g00419 Bma-Chr3:3186899 8.24E-89 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57419 PF14144 DOG1 1.20E-24 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00131 K14431 - csv:101208419 427.943