Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00154 ATGAATAGTATGAATAAACCAGCGTATGCTGCAATTTGCACCCACTCACCCACAAAACCAGTCCTCATATTTGTATCATCTCGCCGGCAGACAAGGCTTACTGCATTAGATCTGATTCAGTTTGCAGCATCAGATGAACATCCAAGGCAGTTTCTCAATTTTGCTGAAGAAGAACTTCATATGGTTCTTGGCCAAGTCACTGATCAAAACCTCAGGCATACCTTGCAATTTGGCATTGGAATTCACCATGCTGGTTTGAATGAAAAAGATAGATCAATGGTGGAAGAACTATTTTCAAACAACAAGATCCAGGTGTTAGTTTGTACAAGCACGTTAGCATGGGGCGTGAATCTTCCGGCGCATCTAGTTATTATAAAGGGAACCGAGTACTATGATGGAAAGTCAAAAAGGTACGTTGATTTTCCAATTACGGATATTTTACAAATGATGGGTCGTGCAGGCCGTCCTCAGTATGATCAACATGGAAAAGCCGTCATTCTTGTTCATGAACCAAAAAAGAGCTTTTATAAAAAGTTTTTGTATGAACCGTTCCCAGTTGAGAGCAGCCTAAAAGAGCAATTGCATGATCACATCAATGCAGAGATAGTTTGTGGAACAATTTGCCACAAGGAGGATGCAATGCGTTATCTAACTTGGACTTACTTTTTTCGCAGATTGATGCAAAATCCTGCTTACTATGGATTGGATTGTGCTGAACCTGAAATTCTTAATTCTTACTTGTCTGGGCTAGTGCAGAACACTTTCGAGGATCTGGAGGATAGTGGGTGCATGAAGATGAATGAAGACAGCGTGGAGCCAATGATGCTTGGTTCAATAGCATCTCAATATTACCTTAGCTACGTTTCTGTATCAATGTTTGGCTCGAATATAGATTCAAATACATCACTTGAAGTATTTTTGCATATTCTGTCTGCTGCATCTGAATTCGATGAACTTCCTGTGCGTCATAATGAGGAAAATTACAATGCAGCTTTGTCTGCAAAAGTTCGATATAAGGTGGATAAGGATCGACTAGATGATCCTCACGTCAAAGCAAATTTGCTGTTTCAGGCACATTTTTCTCAGTCAGAATTACCAATCAGTGACTACATCACAGACTTGAAGTCTGTGTTGGATCAAAGTATACGTATCATCCAGGCCATGATAGACATTTGTGCTAATAGTGGATGGCTTGCAAGCGCAATTACGTGTATGCATCTTTTGCAAATGATCATGCAGGGTTTATGGTCTGATATAGATTCTTCCTTGTGGATGTTGCCATGCATGGATGAAGATCTTGCAAGTCTTCTGGGAAACAAAGAAATTTATTCCGTGCAGCAACTGTTGGATCTTCCAAAGACAACTTTACAAACTCTAGTTGGAAATGTTCCTGCTTCGAAATTATTAAAGGATTTACAGAATTTTCCTTGTATCAAAATGATGGTAAAACTTCAGAACAAGGATGCTGGTAACGAAAAGTCTCTAAGTATCAGACTGGAGAAGACTAATTCAAGGAGAAATAAGTCAAGGGCATTCACGCCTCGATTTCCCAAGGTGAAAGATGAAGCATGGTGGTTGATTCTTGGTAACACCTCTAGTTCTGAACTATATGCTATAAAGAGAGTATCATTCTCTGACCGGTTGGTTACACACATGGAGTTACCTCGGAGTTGTTCCCATCTTCAGGAAATAAAATTGATTTTAGTTTCAGATTGTTATATTGGTTTGGACCAAGAACACTCGATCAAAAGCTTATTGGATGATTGCAGTTAA 1773 39.42 MNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDEHPRQFLNFAEEELHMVLGQVTDQNLRHTLQFGIGIHHAGLNEKDRSMVEELFSNNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKSKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKKFLYEPFPVESSLKEQLHDHINAEIVCGTICHKEDAMRYLTWTYFFRRLMQNPAYYGLDCAEPEILNSYLSGLVQNTFEDLEDSGCMKMNEDSVEPMMLGSIASQYYLSYVSVSMFGSNIDSNTSLEVFLHILSAASEFDELPVRHNEENYNAALSAKVRYKVDKDRLDDPHVKANLLFQAHFSQSELPISDYITDLKSVLDQSIRIIQAMIDICANSGWLASAITCMHLLQMIMQGLWSDIDSSLWMLPCMDEDLASLLGNKEIYSVQQLLDLPKTTLQTLVGNVPASKLLKDLQNFPCIKMMVKLQNKDAGNEKSLSIRLEKTNSRRNKSRAFTPRFPKVKDEAWWLILGNTSSSELYAIKRVSFSDRLVTHMELPRSCSHLQEIKLILVSDCYIGLDQEHSIKSLLDDCS 590
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2001096 2016988 + Bma022773.1 Bma06g00154 83656

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00154 590 Gene3D - 1 186 IPR027417 -
Bma06g00154 590 SUPERFAMILY E set domains 489 583 IPR014756 -
Bma06g00154 590 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 5 214 IPR001650 -
Bma06g00154 590 Pfam Sec63 Brl domain 273 582 IPR004179 -
Bma06g00154 590 SMART helicmild6 65 157 IPR001650 -
Bma06g00154 590 Gene3D C2 domain 474 586 IPR035892 -
Bma06g00154 590 Pfam Helicase conserved C-terminal domain 59 155 IPR001650 -
Bma06g00154 590 SMART Sec63_2 273 584 IPR004179 -
Bma06g00154 590 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 185 IPR027417 -
Bma06g00154 590 Gene3D - 187 280 IPR036388 -
Bma06g00154 590 CDD SF2_C_Ski2 5 169 - -
Bma06g00154 590 PANTHER SEC63 DOMAIN-CONTAINING 1 583 - -
Bma06g00154 590 SUPERFAMILY Winged helix DNA-binding domain 185 285 IPR036390 -
Bma06g00154 590 Gene3D - 281 417 - -
Bma06g00154 590 PANTHER ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 3 1 583 - -
Bma06g00154 590 SUPERFAMILY Sec63 N-terminal domain-like 306 464 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00154 K18663 ASCC3; activating signal cointegrator complex subunit 3 [EC:5.6.2.4] - csv:101222457 989.564
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00688 Bma-Chr1:6311928 Bma06g00154 Bma-Chr6:2001096 1.56E-68 dispersed
Bma06g00154 Bma-Chr6:2001096 Bma13g00534 Bma-Chr13:11162707 1.79E-38 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g647 . Blo16g00171 . . . Bpe13g00309 Bma06g00154 . Cmo13g01125 . . . . . . Cpe20g00069 . . . . . . . . . . . . . . . Cone2ag0807 . . . Lsi02g00115 Csa01g00593 Chy12g01505 Cme12g01949 . . Bda11g01720 . . . . . . . . Cma13g01078 . Car13g00915 . . . Bhi08g01095 . . . . . . Cla04g01159 Cam04g1218 Cec01g1729 Cco01g1775 Clacu04g1245 Cmu04g1224 Cre01g1520 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009577 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g00154 Bma_Chr06 FPKM 0.0 0.0 1.317231 0.0 4.571401 4.673738 3.480524 0.0 0.0 0.0