Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00155 ATGAATTCCCACAAATTTACCGCCAAGACCAGTGAGATGATTGTTGGGGCTCAAGTACTAGCTCTGACTGCTGGTCATGCCCAATTTACTCCCCTTCATCTAGCAGTTTGTTTGATTTCTGATCCTAGTGGAATCTTCAGGCAGGTAGTTGCCGACTCCGGCGAAGAGAACGCTTCAAAAGGGGTGGAGATAGTGTTGAATCGGGCGTTGAAGAAATTCCCATCTCAAACCCCTCCTCCAGAAGATATTCGGGCGAGTTCTACGCTCATCAAAGCGATTACACGGGCTCAATCGGCTCAAAATACGCGTGGGAACACCCATTTGGCTGTAGATCAGTTGATTTTAAGCCTTCTGGAGGATAATCAAATCGGAGAGGTGTTGAATGAAGCAGGCGTTGCATCTGCAAAAGTGAAATCCGAGGTCGAGAAGCTTCGTGGAAAAGAAGAGAGGAGGAGAGTGGACAGTGCTTCTGGCGATTCGACATTTCAAGCTTTGAAGACTTACGGCGGAGATCTCGTCAAACAAGCCAGAAAGCACGACCCAGTCATCGGCCGAGATGAGGAGATTAGAAGGGTGGTGACGATCTTGTCGAGAAGAACTAAGAACAACCCAGTTCTCATCGGAGAGCCCGGCGTCGGAAAAACAGCAGTGGTTGAAGGATTAGCTCAGAGAATAGTGAAAAGAGACGTCCCAAGTAATCTCGCAGATGTCAGGCTCGTAGCGTTAGACATGGGAGCTTTAGTCGCAGGAACCAAATATAGGGGAGAGTTTGAGGAGCGGCTGAAAGCAGTTTTGAAAGAGGTAGAAGATTCAGACGGAAGAGTAATCTTGTTCATCGACGAGATTCACTTAGTCCTCGGCGCCGGCCGCACAGAGAACGTCGCCATGGACGCCGCAAACCTCTTAAAGCCAATGCTTGCCAGAGGCCAGCTCCGGTGCATCGGAGCAACCACCCTCGACGAATACCGGAAGTACGTCGAGAAAGACGCCGCATTTGAGCGACGATTTCAACAGGTATTCGTCGCTGAACCCAGCGTCCAAGATACAGTCAGTATTCTTCGAGGGTTGAAGGAGAGATACGAAGGTCATCATGGCGTGAGAATCCCAGACAGAGCTCTGATCGTTGCAGCTCAGCTCTCCGACAGATATATTACCGGTCGTCGTCTTCCTGACAAGGCGATAGACCTAGTTGACGAAGCCTGCGCAAACGTTAGAGTACAGCTTGATAGTGTTGAGTTTTTCTGTTTTCATTTCCGAGATCAAAACTGGGACTGTTGTAAAAATTTGTTTTTTTTTTTCCAGGTGAGGAAAGAGATAAATGATCTAAGAGATAAGCTTCAGCCTCTGTTGATGAAATATCAGAAGGAGAAAGAGAGGATCAATGAGATTCGAAGATTGAAACGGAGAAGGGAAGAGCTTCAGATTGCGTTACAGGCGGCGGAAAGAAGATACGATTTAGCCAGAGCGGCGGATCTGCGATACGGCGGAATTCAGGAGGTGGAAACCGCCATTGCACGAATCGAAGGTATCACCGGCGAGAATTTAATGCTGACGGGGAACGTCGGACCGGAACACATAGCTGAGGTGGTAGCGAGGTGGACTGGTATTCCGGTCACGCGGCTTGGTCAGAACGAGAAAGAAAGGCTGATTGGGCTCGGCGAGAGGCTGCAGAGGAGAGTCGTCGGACAAGACCGAACCGTCGATGCAGTTGCAGAGGCGGTTTTGAGGTCGAGAGCGGGTCTGGGAAGGCCCCAACAGCCGACTGGCTCCTTCCTCTTTCTGGGTCCGACCGGCGTCGGAAAAACTGAGCTTGCAAAGGCTTTGGCGGAGCAGCTCTTCGACAATGAAAATCTTCTGGTGCGAATGGACATGTCGGAGTATATGGAGCAACACTCTGTTTCTCGATTGATCGGAGCACCTCCTGGGTATGTCGGACACGAGGACGGCGGCCAACTGACGGAGGCAGTTAGGAGGAGACCGTACAGTGTTGTGCTTTTCGATGAAGTGGTTTTTGGAATTTACCCTTCTATTTTCAATACACTTCTTCAAGTTTTAGATGACGGAAGACTGACAGACGGCCATGGCCGAAAGGTTGATTTCGGAAATACGGTAATAGTTATGACGTCAAATCTCGGCGCGGATCATCTTCTATCTGGTTTACTGGGCCAGACCACCATGAAAGTAGCTCAAGAAATGGTTTACGGTGCTAGACCCATCAGGAGGTGGCTCGAGAAACACATCATAACGGAGTTATCAAAAATGCTGATCCGAGAAGAAATCAATGAGAATTCGACCGTGTACGTTGATGCAGGGCAAAACGGGAGCAAATTGAGGTTCAGAGTAGAGAAGACGGAGGATTTGTGGTTTTGA 2370 49.37 MNSHKFTAKTSEMIVGAQVLALTAGHAQFTPLHLAVCLISDPSGIFRQVVADSGEENASKGVEIVLNRALKKFPSQTPPPEDIRASSTLIKAITRAQSAQNTRGNTHLAVDQLILSLLEDNQIGEVLNEAGVASAKVKSEVEKLRGKEERRRVDSASGDSTFQALKTYGGDLVKQARKHDPVIGRDEEIRRVVTILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVKRDVPSNLADVRLVALDMGALVAGTKYRGEFEERLKAVLKEVEDSDGRVILFIDEIHLVLGAGRTENVAMDAANLLKPMLARGQLRCIGATTLDEYRKYVEKDAAFERRFQQVFVAEPSVQDTVSILRGLKERYEGHHGVRIPDRALIVAAQLSDRYITGRRLPDKAIDLVDEACANVRVQLDSVEFFCFHFRDQNWDCCKNLFFFFQVRKEINDLRDKLQPLLMKYQKEKERINEIRRLKRRREELQIALQAAERRYDLARAADLRYGGIQEVETAIARIEGITGENLMLTGNVGPEHIAEVVARWTGIPVTRLGQNEKERLIGLGERLQRRVVGQDRTVDAVAEAVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDNENLLVRMDMSEYMEQHSVSRLIGAPPGYVGHEDGGQLTEAVRRRPYSVVLFDEVVFGIYPSIFNTLLQVLDDGRLTDGHGRKVDFGNTVIVMTSNLGADHLLSGLLGQTTMKVAQEMVYGARPIRRWLEKHIITELSKMLIREEINENSTVYVDAGQNGSKLRFRVEKTEDLWF 789
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2018170 2031228 - Bma022774.1 Bma06g00155 83657

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00155 789 Gene3D - 432 510 - -
Bma06g00155 789 ProSiteProfiles Clp repeat (R) domain profile. 3 147 IPR004176 -
Bma06g00155 789 Coils Coil 456 490 - -
Bma06g00155 789 Pfam AAA lid domain 345 410 IPR041546 -
Bma06g00155 789 Pfam Clp amino terminal domain, pathogenicity island component 17 54 IPR004176 -
Bma06g00155 789 Pfam Clp amino terminal domain, pathogenicity island component 96 146 IPR004176 -
Bma06g00155 789 PANTHER CHAPERONE PROTEIN CLPB3, CHLOROPLASTIC 726 784 - -
Bma06g00155 789 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 162 535 IPR027417 -
Bma06g00155 789 CDD AAA 561 721 - -
Bma06g00155 789 Gene3D - 3 148 IPR036628 -
Bma06g00155 789 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 591 609 IPR001270 GO:0005524
Bma06g00155 789 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 636 654 IPR001270 GO:0005524
Bma06g00155 789 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 666 684 IPR001270 GO:0005524
Bma06g00155 789 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 699 713 IPR001270 GO:0005524
Bma06g00155 789 ProSitePatterns Chaperonins clpA/B signature 1. 297 309 IPR018368 GO:0005524
Bma06g00155 789 ProSitePatterns Chaperonins clpA/B signature 2. 621 639 IPR028299 -
Bma06g00155 789 SMART AAA_5 200 346 IPR003593 -
Bma06g00155 789 SMART AAA_5 587 753 IPR003593 -
Bma06g00155 789 Pfam C-terminal, D2-small domain, of ClpB protein 728 768 IPR019489 -
Bma06g00155 789 SUPERFAMILY Double Clp-N motif 5 141 IPR036628 -
Bma06g00155 789 PANTHER ATP-DEPENDENT CLP PROTEASE 726 784 - -
Bma06g00155 789 PANTHER ATP-DEPENDENT CLP PROTEASE 3 719 - -
Bma06g00155 789 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 536 768 IPR027417 -
Bma06g00155 789 PANTHER CHAPERONE PROTEIN CLPB3, CHLOROPLASTIC 3 719 - -
Bma06g00155 789 Gene3D - 346 413 IPR027417 -
Bma06g00155 789 Pfam AAA domain (Cdc48 subfamily) 587 729 IPR003959 GO:0005524|GO:0016887
Bma06g00155 789 Gene3D - 518 767 IPR027417 -
Bma06g00155 789 Pfam ATPase family associated with various cellular activities (AAA) 205 322 IPR003959 GO:0005524|GO:0016887
Bma06g00155 789 CDD AAA 183 344 - -
Bma06g00155 789 Gene3D - 151 345 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00155 K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB - csv:101221981 1085.48
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma03g00847 Bma06g00155 CCT
Bma06g00155 Bma08g00280 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00155 Bma-Chr6:2018170 Bma08g00280 Bma-Chr8:3794538 0 dispersed
Bma03g00847 Bma-Chr3:8104314 Bma06g00155 Bma-Chr6:2018170 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g643 Blo04g00788 . . . Bpe12g00459 . Bma06g00155 . Cmo13g01128 . . . . . . Cpe20g00068 . Bhi02g00694 Tan09g2052 Cmetu02g0330 . . . . Cla06g01547 Cam06g1708 Cec06g1768 Cco06g1769 Clacu06g1675 Cmu06g1621 Cre06g2434 Cone2ag0814 Cone16ag0200 . . Lsi02g00111 Csa01g00590 . Cme12g01952 . . Bda11g01719 Bda14g00871 . Bpe15g00585 Bma03g00847 Bma08g00280 Sed08g2114 . . Cma13g01080 . Car13g00917 . . . Bhi08g01100 Tan05g2372 Cmetu12g0960 Lac10g0140 Hepe07g2473 . . Cla04g01163 Cam04g1221 Cec01g1732 Cco01g1778 Clacu04g1248 Cmu04g1227 Cre01g1523 Lsi06g01422 Csa01g00282 Chy02g02452 Cme02g01838
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002248 4 2 1 2 2 2 4 2 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g00155 Bma_Chr06 FPKM 1.059224 1.13434 0.961642 0.927119 5.990427 5.15262 5.837453 0.0 0.0 0.393816