Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00156 ATGGGGGAGGAGCGGCACCAGATGATGCAGAATCTCTTCGGTGATCAATCCGAAGAGGAGGAAGAGGTTGATTCCGAGCACGAATCCAATCCTCAGCCAAATTACGCCTCCGATGAAGGGGAAGGAGAACTGGAGCCTGAGGGTGAAGGTGAAGTAGAAGGACATGGGGAAGCAGAAGTTGAGAGTGAAGGTGAGTTGAGAGAAGTAGATCCTGATCCTGGAGAAAGTGAAGTTGAAAGAGGTCAAAGTTCTCATGAGGTAGAGGTTGGGGATCAGCAAGAAGATAGTGAAGAAAAGGAGTCAGACAGTGATGAAAAAGAAGATTATGGTCAAAGAGGAGCAACAAGTAGAAGGAGAGATGTAATTGAAAGTGAATCTGAGAGGTCTGAGGAACATCGTTATCCTGACAATGAAGATGAGGAAGTTGATCAGGCTAGGAGTCCAAGTGAATCATCTAGGGAGGAAAAAAATCAGGTTCACATTTCACAGTCAGCTGCTGAGATACGTGATGTTTTTGGCGACTCTGACGAAGAAGAAGAAGAATCAGAGTACGGAGTCCAAAATGACATCAAGCGAGATTCCAATATATCGCCTATGGAAGATGAAAGCTATGAGAAGAGTCCAAGGCCAGAGGATATGGTACCCGATGAAGATGCTCACTACGGGTTGGATGCGAGATATGAATCAGAAGAGGAAAATTTTGAAGTGAAGCACAAAGAAAAGCCCGTTGGTCCTCCCTTAGAGTTAGAGATCCCATTACGCCCACCTCCTGGACGTCCTGAAAAGATGCACATGATAAAGGTTTCAAATATCATGGGCATTGAGCCAAAACCATTTGATCCAAAGACATACGTAGAAGAGGATATATTTGTGACAGATGAATCTGGATCTAAGAAACGCATACGCTTAGAAAACAATATCGTGCGCTGGAGAACTGTTAAAAGCTCGAATGGTACAATAAATTTTGATGTCCTAGTGTATTTGTATTTTATTGTTTTCTTCTTGGTGATTATGTACGAAAGCAATGCACGTTTTGTTAGATGGTCAGACGGCAGTTTGCAGCTGTTAATAGGAAATGAAGTTCTTGACATATCAGTGCAAGAGGCACAGCATGACCAAGCACACCTATTTCTTCGTCATGGGAAGGTGACATTCCTAAAGATTCAACATTTATGTGAATTGTCCTTGAACATTCTATTGCCATACTTTCAGGGTATCCTTCAATCACAAGGAAGGCTTCTGAGGAAGATGAGGTTTATGCCATCATCTTTGTCGTCTAATTCTCACAGGCTGTTAACTGCTCTTGTTGACTCGCGTCACAAGAAAATTTATAAAGTGAAGAACTGCATCACAGACATTGATCCTGAAAGAGAAAAGGAGGAAAAGGAAAAGGCTGAAAGCCAAACAATCAGGGCCAATGTGCTTCTTAATCGAAAAAGAGAAAAAGTTAATCGGAAATATACCCCAGCTGTGGACAGGAGGCGTCAGCTTTCACCTGGATTCTTGGAGGATGCTCTTGAGGAGGATGATGAAGCAGATTATTATGATCCGCGCCGTTCCCGTCACCGCTTTGAGGAAGATCTGGAGGTGGAGGCCAGAGCAGAAAAACGCATTATGAATGCCAAAAAGTCGCAGGGATTCAAAGACCACCCTAGAAAGTCATCGATGCCGACCAATAAATCATCAGGACGTGCAATGAATATCTCTGACAGTGAAATGGAGGAGTCAGAGTATGAAACTGATGGGGAAGATGATGAGAGGCCTCGTCATAAGAGGACTGAAGAACCGGAGCACGAGTACGAAGAAGACGAGGAAGAGGAAGAACACGATGATGGAGAGCAGGAACTTAACGAAGTATCCGAAGAGGAAGAAATGGAGGGGCGCAAGCATAAAGGTGGAGATTTTGGAGGAAGACTTAAAAGGAAAGGGATCGAATCGGACGAGGAATCTCTGCCTCGAAAGGTGACGAGCCATCGCAGAATGACGGTTTACGATAGCGATGATGAGTGA 2010 44.08 MGEERHQMMQNLFGDQSEEEEEVDSEHESNPQPNYASDEGEGELEPEGEGEVEGHGEAEVESEGELREVDPDPGESEVERGQSSHEVEVGDQQEDSEEKESDSDEKEDYGQRGATSRRRDVIESESERSEEHRYPDNEDEEVDQARSPSESSREEKNQVHISQSAAEIRDVFGDSDEEEEESEYGVQNDIKRDSNISPMEDESYEKSPRPEDMVPDEDAHYGLDARYESEEENFEVKHKEKPVGPPLELEIPLRPPPGRPEKMHMIKVSNIMGIEPKPFDPKTYVEEDIFVTDESGSKKRIRLENNIVRWRTVKSSNGTINFDVLVYLYFIVFFLVIMYESNARFVRWSDGSLQLLIGNEVLDISVQEAQHDQAHLFLRHGKVTFLKIQHLCELSLNILLPYFQGILQSQGRLLRKMRFMPSSLSSNSHRLLTALVDSRHKKIYKVKNCITDIDPEREKEEKEKAESQTIRANVLLNRKREKVNRKYTPAVDRRRQLSPGFLEDALEEDDEADYYDPRRSRHRFEEDLEVEARAEKRIMNAKKSQGFKDHPRKSSMPTNKSSGRAMNISDSEMEESEYETDGEDDERPRHKRTEEPEHEYEEDEEEEEHDDGEQELNEVSEEEEMEGRKHKGGDFGGRLKRKGIESDEESLPRKVTSHRRMTVYDSDDE 669
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2032494 2036582 - Bma022775.1 Bma06g00156 83658

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00156 669 PANTHER BNAANNG06810D PROTEIN 399 668 - -
Bma06g00156 669 PANTHER BNAANNG06810D PROTEIN 5 383 - -
Bma06g00156 669 MobiDBLite consensus disorder prediction 598 621 - -
Bma06g00156 669 PANTHER LEO1 PROTEIN 399 668 IPR007149 GO:0006368|GO:0016570|GO:0016593
Bma06g00156 669 PANTHER LEO1 PROTEIN 5 383 IPR007149 GO:0006368|GO:0016570|GO:0016593
Bma06g00156 669 MobiDBLite consensus disorder prediction 539 669 - -
Bma06g00156 669 MobiDBLite consensus disorder prediction 231 260 - -
Bma06g00156 669 MobiDBLite consensus disorder prediction 622 669 - -
Bma06g00156 669 MobiDBLite consensus disorder prediction 231 245 - -
Bma06g00156 669 Coils Coil 602 622 - -
Bma06g00156 669 MobiDBLite consensus disorder prediction 1 216 - -
Bma06g00156 669 MobiDBLite consensus disorder prediction 105 157 - -
Bma06g00156 669 MobiDBLite consensus disorder prediction 498 518 - -
Bma06g00156 669 MobiDBLite consensus disorder prediction 583 597 - -
Bma06g00156 669 MobiDBLite consensus disorder prediction 539 555 - -
Bma06g00156 669 Pfam Leo1-like protein 264 463 IPR007149 GO:0006368|GO:0016570|GO:0016593
Bma06g00156 669 MobiDBLite consensus disorder prediction 194 216 - -
Bma06g00156 669 MobiDBLite consensus disorder prediction 49 92 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00156 K15177 LEO1; RNA polymerase-associated protein LEO1 - jre:108982944 764.992
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g629 . Blo16g00172 . . . Bpe13g00308 Bma06g00156 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g641 . Blo16g00172 . . . Bpe13g00308 Bma06g00156 . Cmo13g01129 . . . . . . Cpe20g00067 . . . . . . . . . . . . . . . Cone2ag0815 Cone16ag0199 . . Lsi02g00109 . Chy12g01508 Cme12g01953 . . Bda11g01718 . . . . . Sed08g2112 . . Cma13g01081 . Car13g00918 . . . Bhi08g01102 Tan05g2374 Cmetu12g0892 . Hepe07g2474 . . Cla04g01164 Cam04g1222 Cec01g1733 Cco01g1779 Clacu04g1249 Cmu04g1228 Cre01g1524 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005345 1 2 1 1 1 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 0 1 1 1 1 1 1 5 2 2 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g00156 Bma_Chr06 FPKM 6.03543 7.133538 11.152389 12.339501 7.608325 5.375575 7.260435 12.722995 11.775698 14.757386