Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00163 ATGTCCGACAGCGAAGATCATCAGTTTGAATCCAAGGCCGACGCCGGCGCCTCCAAAACCTACCCTCAGCAAGCTGGTACTGTTCGCAAGAATGGCTACATCGTCATCAAGGCCCGCCCTTGCAAGGTTGTTGAAGTTTCTACCTCCAAGACTGGAAAACATGGCCATGCTAAGTGCCACTTTGTTGGAATTGACATTTTCACTGGCAAGAAGTTTGATGATATAGTTCCCTCTTCCCATAACTGTGATGTTCCTCATGTTAATCGCACTGATTATCAGCTTATCGATATTTCAGAGGATGGATTTGTGAGCTTGCTGACAGAAAATGGAAACACTAAGGATGATCTGAGGCTCCCAAGTGATGATGGTTTGCTTACCCAGATAAAGGAGGGTTTTTCTGACGGTAAAGATCTTGTTGTCACTGTGATGTCTGCCATGGGAGAAGAGCAGATTTGTGCTCTGAAGGACATTGGCCCCAAG 480 46.25 MSDSEDHQFESKADAGASKTYPQQAGTVRKNGYIVIKARPCKVVEVSTSKTGKHGHAKCHFVGIDIFTGKKFDDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPSDDGLLTQIKEGFSDGKDLVVTVMSAMGEEQICALKDIGPK 160
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2092183 2093916 - Bma031271 Bma06g00163 83665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00163 160 SUPERFAMILY Nucleic acid-binding proteins 87 157 IPR012340 -
Bma06g00163 160 Gene3D - 1 86 IPR014722 -
Bma06g00163 160 SUPERFAMILY Translation proteins SH3-like domain 16 94 IPR008991 -
Bma06g00163 160 TIGRFAM eIF_5A: translation elongation factor IF5A 18 154 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Bma06g00163 160 CDD S1_eIF5A 87 157 - -
Bma06g00163 160 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 86 155 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Bma06g00163 160 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 51 58 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Bma06g00163 160 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 157 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Bma06g00163 160 MobiDBLite consensus disorder prediction 1 22 - -
Bma06g00163 160 SMART eIF_5a_2 86 155 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Bma06g00163 160 PIRSF Transl_init_eIF5A 1 158 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Bma06g00163 160 PANTHER BNAA07G09420D PROTEIN 1 157 - -
Bma06g00163 160 Gene3D - 87 159 IPR012340 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00163 Bma-Chr6:2092183 Bma14g01659 Bma-Chr14:35180006 7.07E-105 dispersed
Bma06g00163 Bma-Chr6:2092183 Bma06g00164 Bma-Chr6:2095754 3.95E-118 tandem
Bma03g00840 Bma-Chr3:8035180 Bma06g00163 Bma-Chr6:2092183 6.87E-108 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00163 K03263 - jre:108997403 312.383