Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bma06g00166 | ATGGCGCTGTTCAGAAGGTTTTTCAACCGGAAGCCACTGGATGGGCTGCTAGAGATCTCTGAGAGAGTCTATGTGTTTGATTGTTGCTTCTCTACGGATGTCTTGGAAGAAGATGAGTATAAAGTGTACTTGGGTGGGATTGTACAACAGCTGCAGGACTACTTCAATGATGCTTCTTTCATGGTGTTTAACTTCAGAGAAGGGGATAGGCGAAGCCAAATTTTTGATATTTTGTCGGAGTATGACATGACAGTCATGGACTACCCTCGCCAATATGAGGGGTGTCCTCTGCTACCATTAGAGATGATCCACCACTTCCTTATATCTAGTGAGAGCTGGTTGTCTTTAGAGGGGCAGCAAAACGTACTATTGATGCATTGTGAGAGGCGAGGATGGCCTGTCCTTGCATTCATGCTTGCAGCATTGCTTTTGTACCGGAAACAATACAATGGGGAGCTAAAGACTCTTGAAATGGTTTACAAGCAAGCTCCCAAGGAACTTATTCGTCTTTTATCTATTCTAAATCCACAGCCTTCTCAGCTGAGATATCTTCAGTATATTTCTAGGAGAAATTTAGGATCTGATTGGCCTCCGACCGAGACACCTCTATTTTTGGATTGTCTGATACTAAGAGTCATCCCTCTGTTTGATGGGGGGAAAGGGTGCAGGCCTGTTATTCGCATTTATGGCCAGGACCCGTTAACACCAGCCAACAGGAGTTCAAAGCTTCTGTATTCAACTTCAAAGACAAAAAAGCACGTCCACCATTACTTACAGGCAGAGTGTATGCGGGTGAAAATTGATATTCACTGTCGAGTCCAAGGTGATGTTGTTCTTGAGTGTATCCATTTAGATGGAGATCTTGTGCGGGAGGAGATGATGTTTAGAGTTATGTTTCACACAGCTTTTGTGCGGTCAAACAATTTGATGTTTAACCGTGATGAAATTGACATGTTGTGGGATACCAAGGATCAGTTTCCTAGGGACTTCAAAGCAGAGGTTTGTTTTTCCCATGCTGATGCTGCTGTGCCTAATCTCAGCAAAGTTGTGGCACATATTGATGAGAATGAGTCAGAAATTGCTTCACCTGAGGAGTTTTATGAGGTTGAAGAGATTTTTAGCAATGTAGTAGACGCAGAAATTGCGCCACCTCCTCCATTTCGAGGAACGCCTCCTCTGCCACCACCTCCTATGCACGGAGTGCCTCCTCCACCACTTCCTGTGCGCAGTGCACCACCACCTCCTCCAATGCAAGGAACACCTCCTCCATTTCGAGCAAGAGCGCCACCTCCTCCATTTCAAGCAGGAGCGCCACCCCCACCACCTCCTCCAATCCGAGCAGGAGCGCCCCCTCCTCCAATCCGAGCAGGAGCACCTCCTCCAATGCAAGGAGCACCACCTCCTCCACCACCACCAATGCACGGAGCACCTTCTCTTCGTGGATCAACACCTCTACCTTCCAGAGGTGGTCCCCCTCCCCTTCCTCCACCAGGGGCTCGTGTACCGGGCCCACCTGCTCCTCCTCAACTTCCAGGTGGTGGGCCTCCTCCTCCATCATTTCGAGTACCACCACCTCCTCCTATGCATGGAGTGTCACCTCTACCACCTCCTTTGTCTGGAGCACCACCTCCTCCACCGCCACCACCTCCTACGCATGGAGTGCCTCCTCCTCCACCGCTTCCTGTGTGCAGTGCACTACCACCTCCTCCAATGCAAGGAGCACCTCCTCCATTTCGAGCAAGAGCACCACCTCCGCCATTTCAAGCAGGAGCGCCACCTTCGCCACCTCCTCCAATCCGAGCAAAAGCGCCACCTCCGCCACCTCCTCCATTCCGAGCAGGAGCACCTCCTCCAATTCAAGGAGCACCACCTCCTCCACCACCACCAATGCACGGAGCACCTCCTCTTCGTGGATCAACACCTGCACCTCCCAGAGGTGGTCCCCCTCCCCCTCCTCCACGAGGGGCTCGTGTTCTGGGCCTACCTGCTCCTCCTCAACTTCCAGGTGGTGGGCCGCCTCCACCTCCACCTTTAGGTGCCAAAGGAGCTAATGCTTCTCTTGATGCAAGAGGTCTTGCTGCAGGGAGAGGTCGTGGGCTGTCATGTCCTTCAAGCATGAATGCTGTAGGACCTCGACGATCCTCTTTGAAGCCTCTGCACTGGAGCAAAGTGACTAGAGCCTTGCAAGGGAGCTTATGGGATGAAATCCAAAGATATGGAGAGCCTCAAATTGCGCCAGAGTTTGATGTATCTGAGTTAGAGACCCTTTTCTCTGCAACTGTCCCAAAACCTGCTGATGCAGGAGGCAAATCAGGAGGACGACGAAAGTCAGTCGGATCCAAGACTGACAAAGTGCATTTGATTGACCTAAGAAGGGCGAATAACACCGAGATTATGCTCACCAAAGTTAAGATACCACTTTCTGATATGATGGCTGCAGTGCTGGCAATGGATGAGTCAGTCTTAGATGTTAATCAGGTGGAAAATCTCATTAAGTTTTGTCCAACAAAGGAGGAGATAGAACTTCTCAAGGAATACTCGGGGGACAAAGACAGTCTTGGAAAGTGTGAACAGTATTTTATGGAGCTGATGAAAGTACCTCGGGTGGAGTCGAAGTTAAGAGTATTTTCTTTCAAAATTCAATTTCGCTCTCAGATTTCAGAATTCAAAGAGAGTTTAAACACCATAAACTCTGCTTGTGAAGAGGTCAGGAATTCTGTTAAATTAAAGGAGATTATGAAGAAAATCTTTTATCTGGGAAATACATTAAACCAAGGAACTGCAATGGGTTCTGCAATTGGCTTCAAGTTGGATAGTCTTTTGAAGTTCATTGACACCAGTGCTTCTAATAGTAAAATGACACTTATGCATTGCCTTTGCAAGCTCCTTGCTTCTTGGTCACCAACACTGCTTGATTTCCATCTAGACGTGGGCAGTCTAGAAGCTGCATCTAAGATTCAATTGAAGTCTTTAGCAGAAGAAATGCAAGCAATAATTAAGGGATTAGAGAAGGTCAAGCAGGAGCTAGTTGCCTCTGAAAGCGATGGTCCAGTCTCGGATGTTTTTCGTAAGACATTGAAAGACTTTGTGGACATCGCGGAGATTGAGGTGGCATCTGTGACAAATTTATACTCTGTGGTGGGTAGAAATGCAGATGCACTCGCTCTATATTTTGGTGAGGATCCTGCTCGTTGCCCATTTGAGCAAGTTGTAGCAACTCTCTTAAATTTTATAAGAATGTTTCGTAAAGCCCACGAAGAGAACTACAAACAGGCCGAATTAGAAAAGAAGAAAGCAGAGAAGGAAGCGGAAATGGAGAAGGCTAAGGGCATTCATCTAACAAAGAAGAGTGGGAAATAG | 3360 | 47.86 | MALFRRFFNRKPLDGLLEISERVYVFDCCFSTDVLEEDEYKVYLGGIVQQLQDYFNDASFMVFNFREGDRRSQIFDILSEYDMTVMDYPRQYEGCPLLPLEMIHHFLISSESWLSLEGQQNVLLMHCERRGWPVLAFMLAALLLYRKQYNGELKTLEMVYKQAPKELIRLLSILNPQPSQLRYLQYISRRNLGSDWPPTETPLFLDCLILRVIPLFDGGKGCRPVIRIYGQDPLTPANRSSKLLYSTSKTKKHVHHYLQAECMRVKIDIHCRVQGDVVLECIHLDGDLVREEMMFRVMFHTAFVRSNNLMFNRDEIDMLWDTKDQFPRDFKAEVCFSHADAAVPNLSKVVAHIDENESEIASPEEFYEVEEIFSNVVDAEIAPPPPFRGTPPLPPPPMHGVPPPPLPVRSAPPPPPMQGTPPPFRARAPPPPFQAGAPPPPPPPIRAGAPPPPIRAGAPPPMQGAPPPPPPPMHGAPSLRGSTPLPSRGGPPPLPPPGARVPGPPAPPQLPGGGPPPPSFRVPPPPPMHGVSPLPPPLSGAPPPPPPPPPTHGVPPPPPLPVCSALPPPPMQGAPPPFRARAPPPPFQAGAPPSPPPPIRAKAPPPPPPPFRAGAPPPIQGAPPPPPPPMHGAPPLRGSTPAPPRGGPPPPPPRGARVLGLPAPPQLPGGGPPPPPPLGAKGANASLDARGLAAGRGRGLSCPSSMNAVGPRRSSLKPLHWSKVTRALQGSLWDEIQRYGEPQIAPEFDVSELETLFSATVPKPADAGGKSGGRRKSVGSKTDKVHLIDLRRANNTEIMLTKVKIPLSDMMAAVLAMDESVLDVNQVENLIKFCPTKEEIELLKEYSGDKDSLGKCEQYFMELMKVPRVESKLRVFSFKIQFRSQISEFKESLNTINSACEEVRNSVKLKEIMKKIFYLGNTLNQGTAMGSAIGFKLDSLLKFIDTSASNSKMTLMHCLCKLLASWSPTLLDFHLDVGSLEAASKIQLKSLAEEMQAIIKGLEKVKQELVASESDGPVSDVFRKTLKDFVDIAEIEVASVTNLYSVVGRNADALALYFGEDPARCPFEQVVATLLNFIRMFRKAHEENYKQAELEKKKAEKEAEMEKAKGIHLTKKSGK | 1119 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 2113391 | 2152997 | + | Bma022781.4 | Bma06g00166 | 83668 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bma06g00166 | 1119 | Pfam | Formin Homology 2 Domain | 713 | 1081 | IPR015425 | - | |
| Bma06g00166 | 1119 | Coils | Coil | 988 | 1012 | - | - | |
| Bma06g00166 | 1119 | MobiDBLite | consensus disorder prediction | 761 | 780 | - | - | |
| Bma06g00166 | 1119 | SMART | PTEN_C2_2 | 198 | 338 | IPR014020 | - | |
| Bma06g00166 | 1119 | ProSiteProfiles | C2 tensin-type domain profile. | 200 | 339 | IPR014020 | - | |
| Bma06g00166 | 1119 | Gene3D | - | 205 | 337 | - | - | |
| Bma06g00166 | 1119 | SUPERFAMILY | Formin homology 2 domain (FH2 domain) | 648 | 1101 | - | - | |
| Bma06g00166 | 1119 | MobiDBLite | consensus disorder prediction | 486 | 680 | - | - | |
| Bma06g00166 | 1119 | PANTHER | FORMIN-LIKE PROTEIN 15A-RELATED | 1 | 557 | - | - | |
| Bma06g00166 | 1119 | ProSiteProfiles | Formin homology-2 (FH2) domain profile. | 706 | 1107 | IPR015425 | - | |
| Bma06g00166 | 1119 | PANTHER | FORMIN-LIKE PROTEIN 15A-RELATED | 592 | 1109 | - | - | |
| Bma06g00166 | 1119 | Pfam | C2 domain of PTEN tumour-suppressor protein | 200 | 337 | IPR014020 | - | |
| Bma06g00166 | 1119 | PANTHER | FORMIN-J | 1 | 557 | - | - | |
| Bma06g00166 | 1119 | PANTHER | FORMIN-J | 592 | 1109 | - | - | |
| Bma06g00166 | 1119 | SMART | it6_source | 383 | 1117 | IPR015425 | - | |
| Bma06g00166 | 1119 | MobiDBLite | consensus disorder prediction | 384 | 477 | - | - | |
| Bma06g00166 | 1119 | Coils | Coil | 1082 | 1111 | - | - | |
| Bma06g00166 | 1119 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 201 | 338 | IPR035892 | - | |
| Bma06g00166 | 1119 | MobiDBLite | consensus disorder prediction | 1100 | 1119 | - | - | |
| Bma06g00166 | 1119 | MobiDBLite | consensus disorder prediction | 380 | 714 | - | - | |
| Bma06g00166 | 1119 | Gene3D | Protein tyrosine phosphatase superfamily | 10 | 204 | IPR029021 | - | |
| Bma06g00166 | 1119 | Gene3D | Formin, FH2 domain | 707 | 1093 | IPR042201 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Bma03g00847 | Bma06g00166 | CCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bma02g00008 | Bma-Chr2:196173 | Bma06g00166 | Bma-Chr6:2113391 | 4.44E-156 | dispersed | |
| Bma02g00009 | Bma-Chr2:210466 | Bma06g00166 | Bma-Chr6:2113391 | 9.63E-144 | dispersed | |
| Bma04g00272 | Bma-Chr4:2221666 | Bma06g00166 | Bma-Chr6:2113391 | 7.28E-21 | dispersed | |
| Bma06g00166 | Bma-Chr6:2113391 | Bma03g00803 | Bma-Chr3:7425789 | 1.55E-30 | dispersed | |
| Bma06g00166 | Bma-Chr6:2113391 | Bma03g00839 | Bma-Chr3:8003230 | 0 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bma06g00166 | - | - | zju:107419218 | 704.901 |