Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00166 ATGGCGCTGTTCAGAAGGTTTTTCAACCGGAAGCCACTGGATGGGCTGCTAGAGATCTCTGAGAGAGTCTATGTGTTTGATTGTTGCTTCTCTACGGATGTCTTGGAAGAAGATGAGTATAAAGTGTACTTGGGTGGGATTGTACAACAGCTGCAGGACTACTTCAATGATGCTTCTTTCATGGTGTTTAACTTCAGAGAAGGGGATAGGCGAAGCCAAATTTTTGATATTTTGTCGGAGTATGACATGACAGTCATGGACTACCCTCGCCAATATGAGGGGTGTCCTCTGCTACCATTAGAGATGATCCACCACTTCCTTATATCTAGTGAGAGCTGGTTGTCTTTAGAGGGGCAGCAAAACGTACTATTGATGCATTGTGAGAGGCGAGGATGGCCTGTCCTTGCATTCATGCTTGCAGCATTGCTTTTGTACCGGAAACAATACAATGGGGAGCTAAAGACTCTTGAAATGGTTTACAAGCAAGCTCCCAAGGAACTTATTCGTCTTTTATCTATTCTAAATCCACAGCCTTCTCAGCTGAGATATCTTCAGTATATTTCTAGGAGAAATTTAGGATCTGATTGGCCTCCGACCGAGACACCTCTATTTTTGGATTGTCTGATACTAAGAGTCATCCCTCTGTTTGATGGGGGGAAAGGGTGCAGGCCTGTTATTCGCATTTATGGCCAGGACCCGTTAACACCAGCCAACAGGAGTTCAAAGCTTCTGTATTCAACTTCAAAGACAAAAAAGCACGTCCACCATTACTTACAGGCAGAGTGTATGCGGGTGAAAATTGATATTCACTGTCGAGTCCAAGGTGATGTTGTTCTTGAGTGTATCCATTTAGATGGAGATCTTGTGCGGGAGGAGATGATGTTTAGAGTTATGTTTCACACAGCTTTTGTGCGGTCAAACAATTTGATGTTTAACCGTGATGAAATTGACATGTTGTGGGATACCAAGGATCAGTTTCCTAGGGACTTCAAAGCAGAGGTTTGTTTTTCCCATGCTGATGCTGCTGTGCCTAATCTCAGCAAAGTTGTGGCACATATTGATGAGAATGAGTCAGAAATTGCTTCACCTGAGGAGTTTTATGAGGTTGAAGAGATTTTTAGCAATGTAGTAGACGCAGAAATTGCGCCACCTCCTCCATTTCGAGGAACGCCTCCTCTGCCACCACCTCCTATGCACGGAGTGCCTCCTCCACCACTTCCTGTGCGCAGTGCACCACCACCTCCTCCAATGCAAGGAACACCTCCTCCATTTCGAGCAAGAGCGCCACCTCCTCCATTTCAAGCAGGAGCGCCACCCCCACCACCTCCTCCAATCCGAGCAGGAGCGCCCCCTCCTCCAATCCGAGCAGGAGCACCTCCTCCAATGCAAGGAGCACCACCTCCTCCACCACCACCAATGCACGGAGCACCTTCTCTTCGTGGATCAACACCTCTACCTTCCAGAGGTGGTCCCCCTCCCCTTCCTCCACCAGGGGCTCGTGTACCGGGCCCACCTGCTCCTCCTCAACTTCCAGGTGGTGGGCCTCCTCCTCCATCATTTCGAGTACCACCACCTCCTCCTATGCATGGAGTGTCACCTCTACCACCTCCTTTGTCTGGAGCACCACCTCCTCCACCGCCACCACCTCCTACGCATGGAGTGCCTCCTCCTCCACCGCTTCCTGTGTGCAGTGCACTACCACCTCCTCCAATGCAAGGAGCACCTCCTCCATTTCGAGCAAGAGCACCACCTCCGCCATTTCAAGCAGGAGCGCCACCTTCGCCACCTCCTCCAATCCGAGCAAAAGCGCCACCTCCGCCACCTCCTCCATTCCGAGCAGGAGCACCTCCTCCAATTCAAGGAGCACCACCTCCTCCACCACCACCAATGCACGGAGCACCTCCTCTTCGTGGATCAACACCTGCACCTCCCAGAGGTGGTCCCCCTCCCCCTCCTCCACGAGGGGCTCGTGTTCTGGGCCTACCTGCTCCTCCTCAACTTCCAGGTGGTGGGCCGCCTCCACCTCCACCTTTAGGTGCCAAAGGAGCTAATGCTTCTCTTGATGCAAGAGGTCTTGCTGCAGGGAGAGGTCGTGGGCTGTCATGTCCTTCAAGCATGAATGCTGTAGGACCTCGACGATCCTCTTTGAAGCCTCTGCACTGGAGCAAAGTGACTAGAGCCTTGCAAGGGAGCTTATGGGATGAAATCCAAAGATATGGAGAGCCTCAAATTGCGCCAGAGTTTGATGTATCTGAGTTAGAGACCCTTTTCTCTGCAACTGTCCCAAAACCTGCTGATGCAGGAGGCAAATCAGGAGGACGACGAAAGTCAGTCGGATCCAAGACTGACAAAGTGCATTTGATTGACCTAAGAAGGGCGAATAACACCGAGATTATGCTCACCAAAGTTAAGATACCACTTTCTGATATGATGGCTGCAGTGCTGGCAATGGATGAGTCAGTCTTAGATGTTAATCAGGTGGAAAATCTCATTAAGTTTTGTCCAACAAAGGAGGAGATAGAACTTCTCAAGGAATACTCGGGGGACAAAGACAGTCTTGGAAAGTGTGAACAGTATTTTATGGAGCTGATGAAAGTACCTCGGGTGGAGTCGAAGTTAAGAGTATTTTCTTTCAAAATTCAATTTCGCTCTCAGATTTCAGAATTCAAAGAGAGTTTAAACACCATAAACTCTGCTTGTGAAGAGGTCAGGAATTCTGTTAAATTAAAGGAGATTATGAAGAAAATCTTTTATCTGGGAAATACATTAAACCAAGGAACTGCAATGGGTTCTGCAATTGGCTTCAAGTTGGATAGTCTTTTGAAGTTCATTGACACCAGTGCTTCTAATAGTAAAATGACACTTATGCATTGCCTTTGCAAGCTCCTTGCTTCTTGGTCACCAACACTGCTTGATTTCCATCTAGACGTGGGCAGTCTAGAAGCTGCATCTAAGATTCAATTGAAGTCTTTAGCAGAAGAAATGCAAGCAATAATTAAGGGATTAGAGAAGGTCAAGCAGGAGCTAGTTGCCTCTGAAAGCGATGGTCCAGTCTCGGATGTTTTTCGTAAGACATTGAAAGACTTTGTGGACATCGCGGAGATTGAGGTGGCATCTGTGACAAATTTATACTCTGTGGTGGGTAGAAATGCAGATGCACTCGCTCTATATTTTGGTGAGGATCCTGCTCGTTGCCCATTTGAGCAAGTTGTAGCAACTCTCTTAAATTTTATAAGAATGTTTCGTAAAGCCCACGAAGAGAACTACAAACAGGCCGAATTAGAAAAGAAGAAAGCAGAGAAGGAAGCGGAAATGGAGAAGGCTAAGGGCATTCATCTAACAAAGAAGAGTGGGAAATAG 3360 47.86 MALFRRFFNRKPLDGLLEISERVYVFDCCFSTDVLEEDEYKVYLGGIVQQLQDYFNDASFMVFNFREGDRRSQIFDILSEYDMTVMDYPRQYEGCPLLPLEMIHHFLISSESWLSLEGQQNVLLMHCERRGWPVLAFMLAALLLYRKQYNGELKTLEMVYKQAPKELIRLLSILNPQPSQLRYLQYISRRNLGSDWPPTETPLFLDCLILRVIPLFDGGKGCRPVIRIYGQDPLTPANRSSKLLYSTSKTKKHVHHYLQAECMRVKIDIHCRVQGDVVLECIHLDGDLVREEMMFRVMFHTAFVRSNNLMFNRDEIDMLWDTKDQFPRDFKAEVCFSHADAAVPNLSKVVAHIDENESEIASPEEFYEVEEIFSNVVDAEIAPPPPFRGTPPLPPPPMHGVPPPPLPVRSAPPPPPMQGTPPPFRARAPPPPFQAGAPPPPPPPIRAGAPPPPIRAGAPPPMQGAPPPPPPPMHGAPSLRGSTPLPSRGGPPPLPPPGARVPGPPAPPQLPGGGPPPPSFRVPPPPPMHGVSPLPPPLSGAPPPPPPPPPTHGVPPPPPLPVCSALPPPPMQGAPPPFRARAPPPPFQAGAPPSPPPPIRAKAPPPPPPPFRAGAPPPIQGAPPPPPPPMHGAPPLRGSTPAPPRGGPPPPPPRGARVLGLPAPPQLPGGGPPPPPPLGAKGANASLDARGLAAGRGRGLSCPSSMNAVGPRRSSLKPLHWSKVTRALQGSLWDEIQRYGEPQIAPEFDVSELETLFSATVPKPADAGGKSGGRRKSVGSKTDKVHLIDLRRANNTEIMLTKVKIPLSDMMAAVLAMDESVLDVNQVENLIKFCPTKEEIELLKEYSGDKDSLGKCEQYFMELMKVPRVESKLRVFSFKIQFRSQISEFKESLNTINSACEEVRNSVKLKEIMKKIFYLGNTLNQGTAMGSAIGFKLDSLLKFIDTSASNSKMTLMHCLCKLLASWSPTLLDFHLDVGSLEAASKIQLKSLAEEMQAIIKGLEKVKQELVASESDGPVSDVFRKTLKDFVDIAEIEVASVTNLYSVVGRNADALALYFGEDPARCPFEQVVATLLNFIRMFRKAHEENYKQAELEKKKAEKEAEMEKAKGIHLTKKSGK 1119
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2113391 2152997 + Bma022781.4 Bma06g00166 83668

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00166 1119 Pfam Formin Homology 2 Domain 713 1081 IPR015425 -
Bma06g00166 1119 Coils Coil 988 1012 - -
Bma06g00166 1119 MobiDBLite consensus disorder prediction 761 780 - -
Bma06g00166 1119 SMART PTEN_C2_2 198 338 IPR014020 -
Bma06g00166 1119 ProSiteProfiles C2 tensin-type domain profile. 200 339 IPR014020 -
Bma06g00166 1119 Gene3D - 205 337 - -
Bma06g00166 1119 SUPERFAMILY Formin homology 2 domain (FH2 domain) 648 1101 - -
Bma06g00166 1119 MobiDBLite consensus disorder prediction 486 680 - -
Bma06g00166 1119 PANTHER FORMIN-LIKE PROTEIN 15A-RELATED 1 557 - -
Bma06g00166 1119 ProSiteProfiles Formin homology-2 (FH2) domain profile. 706 1107 IPR015425 -
Bma06g00166 1119 PANTHER FORMIN-LIKE PROTEIN 15A-RELATED 592 1109 - -
Bma06g00166 1119 Pfam C2 domain of PTEN tumour-suppressor protein 200 337 IPR014020 -
Bma06g00166 1119 PANTHER FORMIN-J 1 557 - -
Bma06g00166 1119 PANTHER FORMIN-J 592 1109 - -
Bma06g00166 1119 SMART it6_source 383 1117 IPR015425 -
Bma06g00166 1119 MobiDBLite consensus disorder prediction 384 477 - -
Bma06g00166 1119 Coils Coil 1082 1111 - -
Bma06g00166 1119 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 338 IPR035892 -
Bma06g00166 1119 MobiDBLite consensus disorder prediction 1100 1119 - -
Bma06g00166 1119 MobiDBLite consensus disorder prediction 380 714 - -
Bma06g00166 1119 Gene3D Protein tyrosine phosphatase superfamily 10 204 IPR029021 -
Bma06g00166 1119 Gene3D Formin, FH2 domain 707 1093 IPR042201 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00166 - - - zju:107419218 704.901
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma03g00847 Bma06g00166 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00008 Bma-Chr2:196173 Bma06g00166 Bma-Chr6:2113391 4.44E-156 dispersed
Bma02g00009 Bma-Chr2:210466 Bma06g00166 Bma-Chr6:2113391 9.63E-144 dispersed
Bma04g00272 Bma-Chr4:2221666 Bma06g00166 Bma-Chr6:2113391 7.28E-21 dispersed
Bma06g00166 Bma-Chr6:2113391 Bma03g00803 Bma-Chr3:7425789 1.55E-30 dispersed
Bma06g00166 Bma-Chr6:2113391 Bma03g00839 Bma-Chr3:8003230 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g592 Blo04g00779 Blo16g00180 . . . Bpe13g00300 Bma06g00166 . . . Cma10g00209 Cma11g00123 Car10g00196 Car11g00171 . Cpe20g00055 Cpe04g01480 Bhi02g00293 Tan09g2089 . . Hepe09g0095 . . Cla06g01570 Cam06g1735 Cec06g1796 Cco06g1795 Clacu06g1702 Cmu06g1648 Cre06g2459 Cone2ag0827 Cone16ag0189 Cone13ag0054 . Lsi02g00091 Csa01g00571 Chy12g01523 Cme12g01971 . . Bda11g01706 Bda14g00861 . Bpe15g00594 Bma03g00847 . Sed08g0241 Cmo10g00227 Cmo11g00187 Cma13g01093 . Car13g00929 . . Cpe18g00780 Bhi08g01136 Tan05g2418 Cmetu02g1238 Lac10g0118 Hepe07g2490 . . Cla04g01181 Cam04g1237 Cec01g1748 Cco01g1794 Clacu04g1265 Cmu04g1244 Cre01g1538 Lsi06g01445 Csa01g00260 Chy02g02475 Cme02g01861
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma14g01856 . 445 909 FH2 protein (formin) Gene Family AT3G25500 63.5 6.7e-159 558.5
Bma03g01144 . 430 848 FH2 protein (formin) Gene Family AT3G25500 62.2 3.0e-135 479.9
Bma03g01142 BCT 432 862 FH2 protein (formin) Gene Family AT3G25500 60.8 9.7e-134 474.9
Bma06g00347 BCT 1 379 FH2 protein (formin) Gene Family AT3G25500 60.9 7.0e-116 415.6
Bma05g00280 . 481 880 FH2 protein (formin) Gene Family AT3G25500 54.9 3.1e-108 390.2
Bma14g01856 . 479 923 FH2 protein (formin) Gene Family AT2G43800 60.6 1.3e-139 494.2
Bma03g01144 . 434 869 FH2 protein (formin) Gene Family AT2G43800 53.4 6.6e-123 438.7
Bma03g01142 BCT 436 883 FH2 protein (formin) Gene Family AT2G43800 53.0 2.5e-122 436.8
Bma06g00347 BCT 1 400 FH2 protein (formin) Gene Family AT2G43800 53.5 8.9e-104 375.2
Bma12g00784 BCT 12 166 FH2 protein (formin) Gene Family AT4G15200 70.1 3.0e-55 213.0
Bma14g00359 BCT 497 646 FH2 protein (formin) Gene Family AT4G15200 63.6 1.4e-47 187.6
Bma07g01317 BCT 301 448 FH2 protein (formin) Gene Family AT4G15200 58.4 7.8e-43 171.8
Bma14g00359 BCT 270 962 FH2 protein (formin) Gene Family AT5G54650 52.1 6.3e-166 581.6
Bma12g00784 BCT 18 488 FH2 protein (formin) Gene Family AT5G54650 63.9 1.0e-163 574.3
Bma02g01338 BCT 212 687 FH2 protein (formin) Gene Family AT5G54650 61.4 8.5e-155 544.7
Bma07g01317 BCT 311 711 FH2 protein (formin) Gene Family AT5G54650 62.9 8.3e-142 501.5
Bma05g00280 . 479 885 FH2 protein (formin) Gene Family AT5G54650 51.6 1.1e-109 394.8
Bma06g00347 BCT 1 364 FH2 protein (formin) Gene Family AT5G54650 51.2 3.9e-91 333.2
Bma03g01144 . 27 877 FH2 protein (formin) Gene Family AT5G67470 54.7 9.0e-221 763.8
Bma03g01142 BCT 27 891 FH2 protein (formin) Gene Family AT5G67470 54.3 9.9e-220 760.4
Bma06g00347 BCT 2 407 FH2 protein (formin) Gene Family AT5G67470 70.7 4.7e-145 512.3
Bma14g01856 . 443 925 FH2 protein (formin) Gene Family AT5G67470 54.1 1.1e-122 438.0
Bma05g00280 . 484 883 FH2 protein (formin) Gene Family AT5G67470 53.0 6.0e-108 389.0
Bma15g00202 . 291 768 FH2 protein (formin) Gene Family AT1G59910 51.2 4.9e-121 432.6
Bma14g01752 . 395 863 FH2 protein (formin) Gene Family AT1G59910 51.4 4.1e-120 429.5
Bma15g00202 . 131 765 FH2 protein (formin) Gene Family AT1G70140 52.5 3.0e-137 486.1
Bma06g00166 CCT 1 1118 FH2 protein (formin) Gene Family AT1G31810 52.0 1.2e-220 763.8
Bma04g00272 . 579 940 FH2 protein (formin) Gene Family AT1G31810 53.5 1.4e-104 378.3
Bma06g00166 CCT 788 1109 FH2 protein (formin) Gene Family AT5G07650 72.7 3.6e-125 446.0
Bma03g00839 . 1605 1901 FH2 protein (formin) Gene Family AT5G07650 69.4 9.0e-108 388.3
Bma02g00008 . 952 1282 FH2 protein (formin) Gene Family AT5G07650 58.6 3.9e-103 372.9
Bma04g00272 . 662 931 FH2 protein (formin) Gene Family AT5G07650 59.8 2.5e-94 343.6
Bma02g00009 . 866 1181 FH2 protein (formin) Gene Family AT5G07650 55.4 6.3e-93 339.0
Bma06g00166 CCT 699 1102 FH2 protein (formin) Gene Family AT5G07770 63.5 3.9e-132 468.8
Bma03g00839 . 1510 1896 FH2 protein (formin) Gene Family AT5G07770 61.3 1.2e-117 420.6
Bma02g00008 . 893 1300 FH2 protein (formin) Gene Family AT5G07770 54.0 2.5e-110 396.4
Bma04g00272 . 586 924 FH2 protein (formin) Gene Family AT5G07770 55.3 7.2e-102 368.2
Bma02g00009 . 807 1195 FH2 protein (formin) Gene Family AT5G07770 51.0 5.7e-99 358.6
Bma02g00008 . 858 1289 FH2 protein (formin) Gene Family AT3G32400 67.8 1.2e-155 546.6
Bma02g00009 . 772 1188 FH2 protein (formin) Gene Family AT3G32400 63.8 2.4e-143 505.8
Bma06g00166 CCT 700 1109 FH2 protein (formin) Gene Family AT3G32400 62.2 4.6e-134 474.9
Bma03g00839 . 1497 1913 FH2 protein (formin) Gene Family AT3G32400 56.9 7.6e-121 431.0
Bma04g00272 . 586 931 FH2 protein (formin) Gene Family AT3G32400 52.8 4.6e-102 368.6
Bma02g00008 . 1 1289 FH2 protein (formin) Gene Family AT2G25050 52.2 2.7e-310 1061.6
Bma02g00009 . 1 1188 FH2 protein (formin) Gene Family AT2G25050 52.0 6.1e-278 954.1
Bma04g00272 . 586 931 FH2 protein (formin) Gene Family AT2G25050 51.4 5.8e-103 372.9
Bma06g00166 CCT 713 1109 FH2 protein (formin) Gene Family AT5G07780 60.1 1.4e-116 416.8
Bma03g00839 . 1511 1901 FH2 protein (formin) Gene Family AT5G07780 55.8 1.5e-102 370.2
Bma02g00008 . 894 1282 FH2 protein (formin) Gene Family AT5G07780 51.4 1.8e-95 346.7
Bma04g00272 . 587 931 FH2 protein (formin) Gene Family AT5G07780 50.9 3.9e-87 318.9
Bma04g00272 . 559 938 FH2 protein (formin) Gene Family AT5G07740 66.5 6.1e-143 506.1
Bma06g00166 CCT 787 1109 FH2 protein (formin) Gene Family AT5G07760 70.7 1.0e-120 431.4
Bma03g00839 . 1605 1901 FH2 protein (formin) Gene Family AT5G07760 68.5 3.2e-106 383.3
Bma02g00008 . 968 1282 FH2 protein (formin) Gene Family AT5G07760 61.6 6.2e-102 369.0
Bma04g00272 . 661 931 FH2 protein (formin) Gene Family AT5G07760 59.4 2.2e-91 334.0
Bma02g00009 . 882 1181 FH2 protein (formin) Gene Family AT5G07760 57.7 3.2e-90 330.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001040 2 2 4 3 2 2 4 2 2 2 2 2 4 2 2 5 2 4 4 2 2 2 4 2 2 3 3 6 3 1 82
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g00166 Bma_Chr06 FPKM 1.422996 1.583033 90.2612 87.454247 41.508678 40.262104 37.031696 97.699318 102.667496 96.921783