Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00168 ATGTCTGCAGCAACGTTGTGTTCATTGACTTTACAAGCTCAAATCAATGGATTTGAAGTTCTTCAGCTTCAGAAACCATATCTTTTACGACCCAGAAACCGAATCTTTACTGGGAGGAAGTTTAAATCAGTTGTGAAGGCTTCAGCTCGTGTTGATAAGTTTTCGAAGAGCGATATAATTGTAGCTCCTTCTATCCTCAAAGCTAACTTCTCAAAACTGGGAGAGCAGGTTAAAGCAGTGGAATTGGCAGGTTGTGATTGGATACATGTCGATGTGATGGACGGTCGATTTGTTCCAAAAATTACAGTCGGACCTATCTTGGTCGATGCTCTGCGACCTGTGACAGATCTTCCGTTAGATGTTCATTTGATGATTGTCGAACCTGAACAACGAGTTCCTGATTTTATCAAGGCTGGAGCTGATATTGTTAGTGTTCATTGTGAGCAATCTTCGACCATTCACTTGCACCGAACAATTAATCAAATAAAAGGCCTTGGAGCTAAAGCCGGAGTTGTCTTAAATCCTGCTACTTCATTAAGCACTATAGAATATGTTCTTGATGTCGTAGATCTGGTCTTGATTATGTCTGTAAATCCCGGGGTTGGTGGGCAGAGCTTTATTGAGAGCCAAGTGAAGAAAATCTCTGATTTGCGACAGATGTGTGCCGAAAAGGGAGTGAACCCGTGGATTGAAGTGGACGGTGGAGTCACTCGGAAGAATGCCTACAAGGCGATTGAGGCTGGAGCTAATGCTCTTGTTGTTGGCTCTGGTGTATTTGGAGCTAAAGATTACGCCGAGGGTATGAACAAAGTTTTTATATTTACTCGATTTGAATTCTTGTCTTGTATACTTTTGCTTTTATCGGTCAGTGATTTGCAATCAACAGCTATAAGAGGATTCAAAGCCAGTAAAAGGCCAGTAGCTGTTCCTGCATGA 936 41.99 MSAATLCSLTLQAQINGFEVLQLQKPYLLRPRNRIFTGRKFKSVVKASARVDKFSKSDIIVAPSILKANFSKLGEQVKAVELAGCDWIHVDVMDGRFVPKITVGPILVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTINQIKGLGAKAGVVLNPATSLSTIEYVLDVVDLVLIMSVNPGVGGQSFIESQVKKISDLRQMCAEKGVNPWIEVDGGVTRKNAYKAIEAGANALVVGSGVFGAKDYAEGMNKVFIFTRFEFLSCILLLLSVSDLQSTAIRGFKASKRPVAVPA 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2158304 2161654 - Bma022783.2 Bma06g00168 83670

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00168 311 TIGRFAM rpe: ribulose-phosphate 3-epimerase 61 270 IPR026019 GO:0004750|GO:0006098
Bma06g00168 311 Pfam Ribulose-phosphate 3 epimerase family 61 259 IPR000056 GO:0005975|GO:0016857
Bma06g00168 311 Hamap Ribulose-phosphate 3-epimerase [rpe]. 58 274 IPR026019 GO:0004750|GO:0006098
Bma06g00168 311 PANTHER - 17 275 - -
Bma06g00168 311 ProSitePatterns Ribulose-phosphate 3-epimerase family signature 2. 192 214 IPR000056 GO:0005975|GO:0016857
Bma06g00168 311 PANTHER RIBULOSE-5-PHOSPHATE-3-EPIMERASE 17 275 IPR000056 GO:0005975|GO:0016857
Bma06g00168 311 SUPERFAMILY Ribulose-phoshate binding barrel 53 271 IPR011060 -
Bma06g00168 311 CDD RPE 60 270 IPR000056 GO:0005975|GO:0016857
Bma06g00168 311 Gene3D Aldolase class I 49 272 IPR013785 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00168 K01783 rpe, RPE; ribulose-phosphate 3-epimerase [EC:5.1.3.1] - vvi:100267206 445.662
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma03g00837 Bma06g00168 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00837 Bma-Chr3:7945585 Bma06g00168 Bma-Chr6:2158304 4.14E-172 dispersed
Bma06g00168 Bma-Chr6:2158304 Bma12g00248 Bma-Chr12:3207690 4.31E-33 dispersed
Bma04g00274 Bma-Chr4:2244330 Bma06g00168 Bma-Chr6:2158304 1.44E-106 transposed
Bma03g00834 Bma-Chr3:7834505 Bma06g00168 Bma-Chr6:2158304 8.16E-171 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g576 Blo04g00777 Blo16g00182 . . . Bpe13g00298 Bma06g00168 . Cmo13g01200 . . . . . . Cpe20g00011 . . . . . . . . . . . . . . . Cone2ag0833 Cone16ag0181 . . . Csa01g00566 Chy12g01528 Cme12g01976 . . Bda11g01705 Bda14g00858 . Bpe15g00597 Bma03g00837 . Sed08g2085 . . Cma13g01146 . Car13g00975 . . . Bhi08g01141 Tan05g2423 Cmetu12g1896 Lac10g0094 Hepe07g2496 . . Cla04g01185 Cam04g1241 Cec01g1753 Cco01g1799 Clacu04g1270 Cmu04g1249 Cre01g1542 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004286 3 1 2 4 2 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g00168 Bma_Chr06 FPKM 7.100977 8.653843 19.306889 16.116444 11.840293 11.150992 12.117711 4.173347 4.28042 4.119771