Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00173 ATGGCATTTGCGGCGAGATTGAACCCAATTTCATTACCTACGGTAAATCTTTCCGGCGAAAATCGCGGACCCTTTTTACATCGGACGGTGCGCTTCCTAAAACCCCTAAGAGTTATGGCTTCCACAACTGTGGATTTATCCAAGATTGCTGCTGATGAGAAACCATCGATCCCATTGAAGGCTGATAACTGGCAATGGAAGCTGAAGGGTAATTCAATTAACATCTACTATGAGGAGTATGAAAAGGAGAACTCTAATCCGACCAAGGATATCCTTTTCATTCCAACTATCTCTGATGTTAGCACTGTCGAAGAATGGAGAGAAGTAGCCAAAGATATTGTCCAAAGAGATGGTGAAGTCAACTGGCGTGCTAGTATTGTCGATTGGCCTGGTCTGGGGTATTCTGATCGGCCGAAGATGGATTATAATGCTGACGTTATGGAGAAGTTTTTGGTTGATTTTATTAATTCATCCGATAGTCCAGTCTCGATTATCTTTGTTCTACATATATCCGCATTTTGTGAAGTGATTGATCTTGAAAATATTATCCCATATCTGTTTAAGCCCTCTACTTTTTCAGAAAGCGAGCTCGTTGTGATCGGGGGAGGTCATGCCGCTGCAGTGATAACTCGAGCTGCAAAAAAGGGATTGGTGAAACCTAGGGCCATTGCAGCTGTTGCACCCACTTGGGCTGGTCCACTGCCTATCGTGTTTGGCCGAGATTCCAACATGGAAACTAGATGGGCAGCCATAGCTTCATACCTTCCACAAAGAACTGACAACGACATAAAAAATTACTGGAACACCCATTTGAAGAAGAAGCTGAAAAAGCTTCAAACGGGCGGTGAAGAACAAATTTCATCTTCAAATACACTTTCCAAAGGTCAGTGGGAAAGAAGGCTTCAAACAGATATACACACGGCCAAACAAGCTCTGTGCGAAGCCTTATCTCTCGATCAAAAACCATTAATCGATCTGCCTGAATCTAAACCCTTTCTACCAGAAATCAAGCCATTACAAACCCCTCCTTACGCATCGAGCACTGAAAACATAGCCAAATTGCTCGAAAACTGGAAGAAAAACTCACCCAAACCTACAAAGTCTGTAACTACGGCCGGATCTTGCTCTAACGAGGTATCTCAAAGCACAATTGCGACGCCGGAGCCTGAGCCTTTCGACTCACTGTTTACCTCCGATCAGTCGTTTTCTATGGAGGAGACTGCAAATAATCCGACGCCTGAAACCAGCTTTTTTCAAGACGAAAGCAAACCTATTTTTTATCCTAATGTTCCTCTCAGTTCTTTGCTGGAGAAGTGGATTTATGATGATAATATAGGATCTCAAGCTCATGGAGATCTGTTGGCGATGCCATTAGAGGACAGTATAGCTTTGTTTTAG 1398 43.28 MAFAARLNPISLPTVNLSGENRGPFLHRTVRFLKPLRVMASTTVDLSKIAADEKPSIPLKADNWQWKLKGNSINIYYEEYEKENSNPTKDILFIPTISDVSTVEEWREVAKDIVQRDGEVNWRASIVDWPGLGYSDRPKMDYNADVMEKFLVDFINSSDSPVSIIFVLHISAFCEVIDLENIIPYLFKPSTFSESELVVIGGGHAAAVITRAAKKGLVKPRAIAAVAPTWAGPLPIVFGRDSNMETRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQTGGEEQISSSNTLSKGQWERRLQTDIHTAKQALCEALSLDQKPLIDLPESKPFLPEIKPLQTPPYASSTENIAKLLENWKKNSPKPTKSVTTAGSCSNEVSQSTIATPEPEPFDSLFTSDQSFSMEETANNPTPETSFFQDESKPIFYPNVPLSSLLEKWIYDDNIGSQAHGDLLAMPLEDSIALF 465
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2194806 2204765 - Bma022788.2 Bma06g00173 83675

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00173 465 MobiDBLite consensus disorder prediction 360 396 - -
Bma06g00173 465 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 7 253 - -
Bma06g00173 465 Gene3D - 237 306 - -
Bma06g00173 465 SUPERFAMILY alpha/beta-Hydrolases 71 286 IPR029058 -
Bma06g00173 465 Pfam Myb-like DNA-binding domain 246 271 IPR001005 -
Bma06g00173 465 Gene3D alpha/beta hydrolase 68 169 IPR029058 -
Bma06g00173 465 CDD SANT 245 270 IPR001005 -
Bma06g00173 465 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 245 275 IPR017930 -
Bma06g00173 465 ProSiteProfiles Myb-like domain profile. 238 271 IPR001005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00173 - - - csv:101217261 290.812
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00173 Bma-Chr6:2194806 Bma08g00218 Bma-Chr8:2714030 3.55E-59 dispersed
Bma03g00828 Bma-Chr3:7699654 Bma06g00173 Bma-Chr6:2194806 2.60E-119 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g550 . Blo16g00185 . . . Bpe13g00291 Bma06g00173 . . . . . . . . . . . . . . . . . . . . . . . . . Cone16ag0166 . . . Csa01g00547 Chy12g01542 Cme12g01995 . . . . . . . . Sed08g2066 . . . . . . . . Bhi08g01170 Tan05g2445 Cmetu12g1137 Lac10g0074 Hepe07g2511 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012580 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57424 PF00249 Myb_DNA-binding 1.30E-06 CL0123 Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g00173 Bma_Chr06 FPKM 13.878913 15.068752 11.380793 10.729398 28.148201 28.72415 29.11062 11.621396 11.129727 10.887073