Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00176 ATGAATTCCCTGACAAATCAAACTCTTACTTTTAAAACTTTGCCTTTCGCTTGTAAATTGGTATCTCCCTTTCCATTTACTGAAAGCCCATTATTTATTTCCAGCAGAAATCGACGAAAGTTTAGTTCTTCAGAAGCTTTGCAGGTCTTCAATGACTATGCAAAATCATTTCGATGCAATATCAGAACTACGAAAACCATACACTCCCAGTTACTCAAAACAGCTGCTTTGCAGTCTGATATCTTTGTTGCAAATTCTCTGCTGGATTGTTACCGGAAATCTGCTGCCATGGTTAATGCAGTCAGATTGTTTGATACAATTCCTCAACCAAATGTCATTTCTTGGAATTTAGTAATTTCGGGATATAATCAGAACTCTTCATTTGCTGATTCATGGAGGAGTTTTTGCAAAATGCACTCTTCAGGCTGCGAACCAAGTGAGATAACTTATGGGATTGTTCTTTCTGCTTGTACCGCCCTGCAATCCCCCAAGCTTGGTATGCAGATTTATTCTCTTGCGATGAAGAAAGGATTATTTTCCAATGGTTTTGTTCGGGCCGGAGTCATCAACTTATTTTCAAAAAATCACAGCTTTGAGGATGCTCTAAGAGTGTTTCATGATGTTTCATGTCAGAACGTGGTCTGCTGGAATGCCATTATTTCAGGTGCAGTAATGAATGGAGATCATTTGATGGCTTTAGATCTTTTTCACCTAATGCAAGATAGATTTGTGCTGCCAAATAGTTTTACCTTTTCCAGCATTCTATCCGCTTGCACTGCCCTCGAAGAACTCGAAGCTGGAAGAAAAATGCAAGGATTGGTGATCAAATATGGGGAACAAGATGTTTTCGTCGGAACAGCTCTTGTCGATTTGTATGCCAAATGTGGAGATATGAATGAAGCTGTGAAGAAATTCATGGAGATGCCAATTCACAATGTGGTATCATGGACTACTATAATATCTGGTTTTGTACACAAAAAAGATATTTATTTGGCCTTTGAATATTTTAAAAAGATGAGGAAAACTGGGGAGGAAATAAATAGCTATACTGTTACTAGTATACTTACAGTCAGTGCTGTAATGGGTTTGCTAAAAGAGGCAGTTCAACTCCATTGTTGGATTTTTAAAGCTGGTTTCTTGTCAGATGCGGTGGTGGGGGCTGCTTTAGTTAATATGTATTCGAAAATCGGAGCCATTGATTTTTCTGCAGACGTATTTGGAGAGATGAAAGATAAGAAGAGTCCTGGTTTATGGGCTGCCATGTTGAGTTCCTTTGCTCATAATGAGGATTCTGAAAGAGCTACTGAATTTTTCAGGAGAATGTTGAGGGAAAATGTCAAACCAGATAAGTTTTCGACTTCTAGTATCTTAAGTGTGACAGACAGTTTGAAATTTGGGAAGCAATTGCATAGTTCAACGCTTAAAAACGGATTAGTCTCTGATATTGCTGTCGGTAGTTCTCTTTCGACGATGTATTCCAAGTGTGGAAATATAGAGGACTCTTATGGAGTTTTCGAAAATATGGTAGAAAAAGATAATGTTTCGTGGGCTTCGATGATTGCAGGCTTCTCTGAACATGGCTTCTCAGATGAAGCCATTCGAATATTCCGAGAAATGTTGTTTGAAGAGACTAAACCTGATCAAACGACGTTAACTGCTGTTTTGACTGCGTGTTTTAATCTTCGATCCTTACGGACGAGTCAGGAAATTCACGGTTTTGCTTTTCGTGCAGGATTTCACGAAGAAAATAGTCTTTGCAGTGCACTTGTGACTGTGTATTCTAAGGCCGGTTCCCTCGAAATAGCGAGAAGGGTGTTCAAAATGTTACCTCAAAAGGATCATATTTCATGTACATCGTTGATTTCTGGATATGCTCAACGAAAGTGCGTAAAAGAAGCACTTCTTTTGTTCGATGATATGAGGTCGGCTAATTTACCCACTGACGCCTCAATTTCGTCTATTTTTGGAGCCATTGCTCTTCTGAATAGGCCAGGAATTGGAATTCACCTTCATGCTCACACCACAAAAGTGGGCTTGGAGAAAGATGTTTCTGTTGGCAGTTCACTTGTTATGATGTACTCAAAATGTGGAAACATTGAAGATTGCCTCCGAGCATTCGATCAGATCGAGAAACCTGACTTGATCGGATGGACGGCTTTGATTGTGAGCTATGCTCAACACGGAAAAGGCACAGAGGCGTTAAGAGTCTATGAGCTGATGAAGAAGGAAGGAATCAAACCCGATCCCGTAACCTTTATTGGGGTTTTATCTGCATGTAGCCATAACGGGTTGGTTGAAGAAGCATATTTCCATCTTGATTCAATGGCTAAAGACTATGGACTCGAGCCGGGCCATCGTCATTACGCATGTATGGTTGATCTTCTCGGTCGGTTAGGCCGACTCAAAGAGGCCGAAAGGTTCATTAGCAATATACCCATCGGTCCCGATGCTCTAGTGTGGGGGACCCTTCTTGCTGCTTGTAAAGTACACGGTGATATCGACCTCGGAAAGTTGGCAGCAAGAAAGGTTATGGAGTTGGAGCCTAGTGATAGTGGTGCTTATGTTTCTCTATCGAATATTTGTGCTGATTTGGGCCACTGGGACGATGTCTTGAAAATTAGAAGCAATATGAAGGAAACAGGGGTGGCGAAGGATCTTGGTTGGAGTTACGTGTGA 2676 40.81 MNSLTNQTLTFKTLPFACKLVSPFPFTESPLFISSRNRRKFSSSEALQVFNDYAKSFRCNIRTTKTIHSQLLKTAALQSDIFVANSLLDCYRKSAAMVNAVRLFDTIPQPNVISWNLVISGYNQNSSFADSWRSFCKMHSSGCEPSEITYGIVLSACTALQSPKLGMQIYSLAMKKGLFSNGFVRAGVINLFSKNHSFEDALRVFHDVSCQNVVCWNAIISGAVMNGDHLMALDLFHLMQDRFVLPNSFTFSSILSACTALEELEAGRKMQGLVIKYGEQDVFVGTALVDLYAKCGDMNEAVKKFMEMPIHNVVSWTTIISGFVHKKDIYLAFEYFKKMRKTGEEINSYTVTSILTVSAVMGLLKEAVQLHCWIFKAGFLSDAVVGAALVNMYSKIGAIDFSADVFGEMKDKKSPGLWAAMLSSFAHNEDSERATEFFRRMLRENVKPDKFSTSSILSVTDSLKFGKQLHSSTLKNGLVSDIAVGSSLSTMYSKCGNIEDSYGVFENMVEKDNVSWASMIAGFSEHGFSDEAIRIFREMLFEETKPDQTTLTAVLTACFNLRSLRTSQEIHGFAFRAGFHEENSLCSALVTVYSKAGSLEIARRVFKMLPQKDHISCTSLISGYAQRKCVKEALLLFDDMRSANLPTDASISSIFGAIALLNRPGIGIHLHAHTTKVGLEKDVSVGSSLVMMYSKCGNIEDCLRAFDQIEKPDLIGWTALIVSYAQHGKGTEALRVYELMKKEGIKPDPVTFIGVLSACSHNGLVEEAYFHLDSMAKDYGLEPGHRHYACMVDLLGRLGRLKEAERFISNIPIGPDALVWGTLLAACKVHGDIDLGKLAARKVMELEPSDSGAYVSLSNICADLGHWDDVLKIRSNMKETGVAKDLGWSYV 891
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2220914 2223589 + Bma022791.1 Bma06g00176 83678

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00176 891 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 512 546 IPR002885 -
Bma06g00176 891 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 414 448 IPR002885 -
Bma06g00176 891 PANTHER OS07G0578800 PROTEIN-RELATED 112 360 IPR045215 GO:0003723|GO:0009451
Bma06g00176 891 Gene3D Tetratricopeptide repeat domain 462 573 IPR011990 GO:0005515
Bma06g00176 891 Gene3D Tetratricopeptide repeat domain 278 361 IPR011990 GO:0005515
Bma06g00176 891 Gene3D Tetratricopeptide repeat domain 30 160 IPR011990 GO:0005515
Bma06g00176 891 TIGRFAM PPR: pentatricopeptide repeat domain 214 247 IPR002885 -
Bma06g00176 891 TIGRFAM PPR: pentatricopeptide repeat domain 113 147 IPR002885 -
Bma06g00176 891 TIGRFAM PPR: pentatricopeptide repeat domain 418 449 IPR002885 -
Bma06g00176 891 TIGRFAM PPR: pentatricopeptide repeat domain 717 748 IPR002885 -
Bma06g00176 891 TIGRFAM PPR: pentatricopeptide repeat domain 514 547 IPR002885 -
Bma06g00176 891 TIGRFAM PPR: pentatricopeptide repeat domain 314 347 IPR002885 -
Bma06g00176 891 TIGRFAM PPR: pentatricopeptide repeat domain 615 646 IPR002885 -
Bma06g00176 891 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 613 647 IPR002885 -
Bma06g00176 891 PANTHER OS09G0413300 PROTEIN 59 122 - -
Bma06g00176 891 PANTHER OS09G0413300 PROTEIN 364 463 - -
Bma06g00176 891 PANTHER OS09G0413300 PROTEIN 463 582 - -
Bma06g00176 891 PANTHER OS09G0413300 PROTEIN 680 891 - -
Bma06g00176 891 PANTHER OS09G0413300 PROTEIN 112 360 - -
Bma06g00176 891 Pfam PPR repeat family 712 760 IPR002885 -
Bma06g00176 891 Pfam PPR repeat family 110 157 IPR002885 -
Bma06g00176 891 Pfam PPR repeat family 312 356 IPR002885 -
Bma06g00176 891 Pfam PPR repeat family 511 559 IPR002885 -
Bma06g00176 891 Pfam PPR repeat family 212 258 IPR002885 -
Bma06g00176 891 Pfam E motif 830 891 IPR046848 -
Bma06g00176 891 PANTHER OS09G0413300 PROTEIN 575 679 - -
Bma06g00176 891 Gene3D Tetratricopeptide repeat domain 575 650 IPR011990 GO:0005515
Bma06g00176 891 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 312 346 IPR002885 -
Bma06g00176 891 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 713 747 IPR002885 -
Bma06g00176 891 Gene3D Tetratricopeptide repeat domain 161 277 IPR011990 GO:0005515
Bma06g00176 891 Gene3D Tetratricopeptide repeat domain 651 851 IPR011990 GO:0005515
Bma06g00176 891 Gene3D Tetratricopeptide repeat domain 362 461 IPR011990 GO:0005515
Bma06g00176 891 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 850 884 IPR002885 -
Bma06g00176 891 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 111 145 IPR002885 -
Bma06g00176 891 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 212 246 IPR002885 -
Bma06g00176 891 Pfam PPR repeat 418 446 IPR002885 -
Bma06g00176 891 Pfam PPR repeat 687 710 IPR002885 -
Bma06g00176 891 Pfam PPR repeat 286 309 IPR002885 -
Bma06g00176 891 Pfam PPR repeat 616 644 IPR002885 -
Bma06g00176 891 Pfam PPR repeat 586 612 IPR002885 -
Bma06g00176 891 PANTHER OS07G0578800 PROTEIN-RELATED 59 122 IPR045215 GO:0003723|GO:0009451
Bma06g00176 891 PANTHER OS07G0578800 PROTEIN-RELATED 364 463 IPR045215 GO:0003723|GO:0009451
Bma06g00176 891 PANTHER OS07G0578800 PROTEIN-RELATED 575 679 IPR045215 GO:0003723|GO:0009451
Bma06g00176 891 PANTHER OS07G0578800 PROTEIN-RELATED 463 582 IPR045215 GO:0003723|GO:0009451
Bma06g00176 891 PANTHER OS07G0578800 PROTEIN-RELATED 680 891 IPR045215 GO:0003723|GO:0009451
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00176 - - - bhj:120082449 1151.35
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00176 Bma-Chr6:2220914 Bma07g00390 Bma-Chr7:4772840 3.02E-78 dispersed
Bma06g00176 Bma-Chr6:2220914 Bma02g01043 Bma-Chr2:51951043 2.13E-22 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g545 . Blo16g00187 . . . Bpe13g00289 Bma06g00176 . Cmo13g01182 . . . . . . Cpe20g00022 . . . . . . . . . . . . . . . . . . . . Csa01g00539 Chy12g01549 . . . . . . . . . . . . Cma13g01128 . Car13g00963 . . . . . . . . . . Cla04g01204 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012059 0 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 1 1 1 1 1 1 1 0 2 1 1 1 0 1 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g00176 Bma_Chr06 FPKM 13.89538 15.067001 15.054023 16.019428 22.09774 23.579901 23.788761 16.552275 14.597561 15.338829