Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00193 ATGATCCTCTTGCCTCCCATTTCCTTATCAAACTCTTCCACTCTGTCAACCGAACTTCCGAAGCTCAATCCTAATTTTTACCACCTCTCACTCCTATCTAAACCAACCAACTTGCTCTTCCGCCGGAGATTTTTCTCTGAGGACCGGAAATTATCTTATGGCGCCGGTAAAATCAGAGCGAAGACGAAGGAATTGGTACTTGGAAATCCTTCGGTGACGGTAGAGAAGGGTAAATATAGTTATGATGTAGAAACTCTTATCAATAAACTTAGTAGCCTACCTCCTCGAGGAAGCATAGCTCGATGCCTCGACATCTTCAAAAACAAGCTTTCGCTCAATGACTTTGCTCTGGTCTTCAAAGAATTTGCAACTCGAGGAGATTGGCAAAGGTCTCTCCGCCTTTTTAAGTATATGCAACGACAGATATGGTGCAAGCCAAGCGAGCACATTTACACAATTATGATCAGCTTGCTTGGCCGCGAGGGGTTGCTAGATAAATGTAGGGAGATATTCGACGAAATGGAAAGTCAGGGAGTCATCCGCAGCGTTTTTTCTTACTTTAGGACTATGAATGATGGTGGTATTGTTCCTGATATAACTACATATAGTTACCTTGTTGAAACATTCAATTATCTGAGTAAGCTTGAGAAAGTTTCTGAGCTTCTTAAGGACATGGAATCTGGAGGGATTTTACCTGAGATAACGTCATATAATGTGCTCCTAGAGGCATACGCAAAATCAGGATCAATCAAGGAAGCAATGGACGTCTTTAGGCAAATGCAGGCTGCAGGTTGTGCACCCAATGCAACCACTTACAGTATTTTGTTAAATTTATATGGGCAGCGCGGAAGGTATGATGATGTTCGTGGGCTTTTTCTTGAAATGAAAGTAAGCAATACCGAGCCTGATGCTGGCACTTATAACATACTAATACAAGTTTTTGGTGAGGGTGGATACTTTAAGGAGGTAGTAACATTGTTTCATGATATGGTTGAGGAAAATATAGAGCCTAATATGGAGACATATGAGGGTTTAGTATTTGCTTGTGGGAAAGGTGGGTTGCATGAGGATGCTAAGAAAATTATAAATCACATGATTGAAAAGGGAGTTGTACCAAGTGCCAAAGCATATACCGGCTTAATTGAAGCATACGGACAAGCTGCATTGTATGAGGAAGCTTTGGTTGCCTTTAACACAATGAATGAGGTAGAGAGCAAGCCATCTGTTGAAACCTACAATTCACTCATTCATGCATTTGCTATGGGTGGCCTTTACAAGGAGTCTGAAGCAATTTTATTTAGAATGAGAGAATCTAGTATTGCACTAAATGTGAAATCATTCAATGGTGTCATTGGAGCTTATAGGCAAGGTGGCCAGTTTGAAAAAGCAATAAAGGCATATGTTGACATGGAAAAGACAAGATGTGAACCTGATGAGGAAACTCTTGAAGCAGTTTTAAGTGTTTACTGCTTTGCAGGTCTTGCTGATGAGAGTCTGGAGCAGTTTCAAGAAATCAAAGCTTCAGGAATACCGCCCAGCATTCTGAGCTACTGCATGATGCTCGCTGTTTTTGCAAAGAATGGCAGGTTGGAGAATGTCTATGAGTTGCTGGATGAGATGGTTACAAACAGGAAATCAAATATTCATCAAGTCATAGGTCAAATGATCATTGGAGATTACGACGACGAAGCTAATTGGCAGATGGTAGAATATATTTTTGATAAACTTATTTCTGAAGGATGTGGATTTGGTATGAGATTCTATAACACCCTTCTAGATGCACTCTGGTGGTTGGGCCAGAAAAAACGTGCTGCAAGATTGCTCAATGAAGCAACAAAGCGAAGAGTTTTTCCTGAAATTTTTAGGAAAAACAAACTTATTTGGTCTGTAGATGTGCACAGGATGTGGGAAGGTGGTGCTTATACAGCCATATCAGTTTGGATTAACAACATGCATGAAATGTTTATGAGCGGCGAGGATCTCCCACACCTTGCTTCTGTTGTTGTTGGACGAGGTAGGATGGAGAAAGACACAACTGCAGAAGATGTCCCCATTGCAAAGGCTGCCTATTCATTCCTACAGGATAATGTATCCTCCTCATTTTCTTTCGCTGGATGGAGCAAGGGTCGAATTCTCTGTCAACGATCGCAGCTCAAGCGGCTTTTCTCTGGCATGGAAAGAACATCTTCAGATGGATCTAAAAAAGGGGAAATAATTACTCTAGATAATTCCACCTTAAATCTTCTAGAAACCAGAATATTCCGTACTGATACAGATGATGAGCAACATAAAGACACTATTTCTGAATCAAGTAACAGAACAAAAATAGAGCTTTTGACTAGTGGAGTTTAA 2352 40.73 MILLPPISLSNSSTLSTELPKLNPNFYHLSLLSKPTNLLFRRRFFSEDRKLSYGAGKIRAKTKELVLGNPSVTVEKGKYSYDVETLINKLSSLPPRGSIARCLDIFKNKLSLNDFALVFKEFATRGDWQRSLRLFKYMQRQIWCKPSEHIYTIMISLLGREGLLDKCREIFDEMESQGVIRSVFSYFRTMNDGGIVPDITTYSYLVETFNYLSKLEKVSELLKDMESGGILPEITSYNVLLEAYAKSGSIKEAMDVFRQMQAAGCAPNATTYSILLNLYGQRGRYDDVRGLFLEMKVSNTEPDAGTYNILIQVFGEGGYFKEVVTLFHDMVEENIEPNMETYEGLVFACGKGGLHEDAKKIINHMIEKGVVPSAKAYTGLIEAYGQAALYEEALVAFNTMNEVESKPSVETYNSLIHAFAMGGLYKESEAILFRMRESSIALNVKSFNGVIGAYRQGGQFEKAIKAYVDMEKTRCEPDEETLEAVLSVYCFAGLADESLEQFQEIKASGIPPSILSYCMMLAVFAKNGRLENVYELLDEMVTNRKSNIHQVIGQMIIGDYDDEANWQMVEYIFDKLISEGCGFGMRFYNTLLDALWWLGQKKRAARLLNEATKRRVFPEIFRKNKLIWSVDVHRMWEGGAYTAISVWINNMHEMFMSGEDLPHLASVVVGRGRMEKDTTAEDVPIAKAAYSFLQDNVSSSFSFAGWSKGRILCQRSQLKRLFSGMERTSSDGSKKGEIITLDNSTLNLLETRIFRTDTDDEQHKDTISESSNRTKIELLTSGV 783
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2360548 2364353 - Bma022808.1 Bma06g00193 83695

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00193 783 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 147 181 IPR002885 -
Bma06g00193 783 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 303 337 IPR002885 -
Bma06g00193 783 ProSiteProfiles Smr domain profile. 630 719 IPR002625 -
Bma06g00193 783 PANTHER PLASTID TRANSCRIPTIONALLY ACTIVE CHROMOSOME 2-LIKE PROTEIN 30 186 - -
Bma06g00193 783 PANTHER PLASTID TRANSCRIPTIONALLY ACTIVE CHROMOSOME 2-LIKE PROTEIN 180 744 - -
Bma06g00193 783 Pfam Pentacotripeptide-repeat region of PRORP 391 497 IPR033443 -
Bma06g00193 783 Pfam Pentatricopeptide repeat domain 221 282 IPR002885 -
Bma06g00193 783 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 233 267 IPR002885 -
Bma06g00193 783 Gene3D Tetratricopeptide repeat domain 471 546 IPR011990 GO:0005515
Bma06g00193 783 Gene3D Tetratricopeptide repeat domain 404 470 IPR011990 GO:0005515
Bma06g00193 783 PANTHER PLASTID TRANSCRIPTIONALLY ACTIVE CHROMOSOME 2-LIKE PROTEIN 30 186 - -
Bma06g00193 783 PANTHER PLASTID TRANSCRIPTIONALLY ACTIVE CHROMOSOME 2-LIKE PROTEIN 180 744 - -
Bma06g00193 783 TIGRFAM PPR: pentatricopeptide repeat domain 411 443 IPR002885 -
Bma06g00193 783 TIGRFAM PPR: pentatricopeptide repeat domain 306 338 IPR002885 -
Bma06g00193 783 TIGRFAM PPR: pentatricopeptide repeat domain 516 543 IPR002885 -
Bma06g00193 783 TIGRFAM PPR: pentatricopeptide repeat domain 271 304 IPR002885 -
Bma06g00193 783 TIGRFAM PPR: pentatricopeptide repeat domain 341 373 IPR002885 -
Bma06g00193 783 TIGRFAM PPR: pentatricopeptide repeat domain 150 180 IPR002885 -
Bma06g00193 783 TIGRFAM PPR: pentatricopeptide repeat domain 446 479 IPR002885 -
Bma06g00193 783 TIGRFAM PPR: pentatricopeptide repeat domain 236 269 IPR002885 -
Bma06g00193 783 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 513 543 IPR002885 -
Bma06g00193 783 Gene3D Tetratricopeptide repeat domain 288 403 IPR011990 GO:0005515
Bma06g00193 783 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 338 372 IPR002885 -
Bma06g00193 783 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 408 442 IPR002885 -
Bma06g00193 783 Pfam PPR repeat family 305 349 IPR002885 -
Bma06g00193 783 Pfam PPR repeat 150 179 IPR002885 -
Bma06g00193 783 Pfam PPR repeat 516 542 IPR002885 -
Bma06g00193 783 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 478 512 IPR002885 -
Bma06g00193 783 Gene3D Tetratricopeptide repeat domain 95 181 IPR011990 GO:0005515
Bma06g00193 783 Gene3D Tetratricopeptide repeat domain 182 281 IPR011990 GO:0005515
Bma06g00193 783 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 443 477 IPR002885 -
Bma06g00193 783 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 198 232 IPR002885 -
Bma06g00193 783 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 373 407 IPR002885 -
Bma06g00193 783 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 268 302 IPR002885 -
Bma06g00193 783 SMART SMR_2 627 716 IPR002625 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00193 - - - tcc:18603804 933.324
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00193 Bma-Chr6:2360548 Bma04g00096 Bma-Chr4:780018 3.05E-12 dispersed
Bma06g00193 Bma-Chr6:2360548 Bma01g00380 Bma-Chr1:3122549 2.76E-17 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g671 . . . . . . Bma06g00193 . . Cmo18g00111 . . . . . Cpe20g00216 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bhi08g01440 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008894 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 2 1 1 1 1 1 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g00193 Bma_Chr06 FPKM 1.463602 2.102714 0.0 1.302037 3.601918 2.714016 3.071089 0.0 0.347796 0.0