Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00196 ATGGAGATGGCGACGAAGAACGCCAACACCAGGGAGAAGAGGCTGAGACAACGAAGAATCTGGGTGGACATAGGGGATTTAAACTTGACAAACTCAGCAAATATTTTATATGGAGCAGAACCGACTGCCCAAGACGCCGCCATAGCCAACCTCGTTCTTCAATCCGACTCGAAAACCCTAATTCAAGCTCTTCAGAATTCCCAATTTCAATGGACTACGAACTTGGTCAACCAGGTTTTGAAGCGCCTGTGGAATCACGGACCAAAAGCGCTTCAGTTCTTCAAAAATCTCGAGCGCCATCCCACTTACGCTCACTCGTCGTCGTCCTTCGACCACGCGATCGACATTGCCGGTCGTTTGCGAAATTACAAGACTCTCTGGACCTTTGTGGCTCGAATGAGAGCTCGTCGCCTTGGCCCGACTCCCAAGACGTTTGCTATTATAACAGAGAGGTATGTATCTGCAGGTAAGCCCGATAGAGCAATTAAGGTCTTTTTGTCAATGCACGAACATGGTTGTCAACAAGATTTGAATTCGTTCAACACAATTCTTCATATTCTCTGTGAATCCAAACGAGTCGAAATGGCTTACAATAATCTGTTAAGAACTGGACAGACTATGGAAGCTTGGGATTTCTTCCTGCAAATGAAGAAGAGAAAATGTGAAATTGATGTTTTCACCTACACGACTATGGTTCACGGGTTTGGTGTTCTTGGGGAGCTTAAGAAAGCTCGTAAGGTGTTCGATGAAATGCACAAGAAAGGCGTTTCTCCTTCTGTTGCAACATACAATGCTATGATTCAGGTTTTGTGTAAGAAAGATAACGTCGAAAATGCAATTTCGACGTTTGAAGAGATGTTGACGAAAGGCCTCGTCCCAAATTCTACGACTTACAATGTCTTGATAAGAGGATTGTGTCATTCAGGTGACATGGAAAGGGCCGTGAAATTTATGGAGCGAATGAGTGACCATCATTGCGAGCCGAATGTTCAAACGTTCAATCTTTTGATCCGACATTTTTTGGAGGCCGGAGAGATAGAAAAGGGGCTGAGTACGTTTGAAAAAATGGGTGGGGATAATTGTTTCCCAAACTTGGATACTTACAATATTGTGATTAGTGCGATGTTTGTGAGGAAGAGATCAGAGGATTTGTTGACTGCTGGCAAGTTGTTGATTGAGATGGTCGACAGAGGGTTTCTTCCTCGGAGGTTTACTTTCAATCGAGTATTGAATGGGCTTTTGCTGACGAATAATCAAGGTTTTGCGCAGGAAATACTGAGATTACAGAGCAGGTGCCGGGGCCCTCTTCCTCGTCAATTTAAACTGTGA 1329 44.24 MEMATKNANTREKRLRQRRIWVDIGDLNLTNSANILYGAEPTAQDAAIANLVLQSDSKTLIQALQNSQFQWTTNLVNQVLKRLWNHGPKALQFFKNLERHPTYAHSSSSFDHAIDIAGRLRNYKTLWTFVARMRARRLGPTPKTFAIITERYVSAGKPDRAIKVFLSMHEHGCQQDLNSFNTILHILCESKRVEMAYNNLLRTGQTMEAWDFFLQMKKRKCEIDVFTYTTMVHGFGVLGELKKARKVFDEMHKKGVSPSVATYNAMIQVLCKKDNVENAISTFEEMLTKGLVPNSTTYNVLIRGLCHSGDMERAVKFMERMSDHHCEPNVQTFNLLIRHFLEAGEIEKGLSTFEKMGGDNCFPNLDTYNIVISAMFVRKRSEDLLTAGKLLIEMVDRGFLPRRFTFNRVLNGLLLTNNQGFAQEILRLQSRCRGPLPRQFKL 442
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2399954 2404866 + Bma031274 Bma06g00196 83698

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00196 442 SUPERFAMILY HCP-like 229 354 - -
Bma06g00196 442 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 224 258 IPR002885 -
Bma06g00196 442 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 329 363 IPR002885 -
Bma06g00196 442 Pfam PPR repeat family 258 307 IPR002885 -
Bma06g00196 442 Pfam PPR repeat family 176 235 IPR002885 -
Bma06g00196 442 Pfam PPR repeat family 328 375 IPR002885 -
Bma06g00196 442 Gene3D Tetratricopeptide repeat domain 45 197 IPR011990 GO:0005515
Bma06g00196 442 Gene3D Tetratricopeptide repeat domain 309 425 IPR011990 GO:0005515
Bma06g00196 442 Gene3D Tetratricopeptide repeat domain 198 308 IPR011990 GO:0005515
Bma06g00196 442 TIGRFAM PPR: pentatricopeptide repeat domain 262 295 IPR002885 -
Bma06g00196 442 TIGRFAM PPR: pentatricopeptide repeat domain 297 330 IPR002885 -
Bma06g00196 442 TIGRFAM PPR: pentatricopeptide repeat domain 332 364 IPR002885 -
Bma06g00196 442 TIGRFAM PPR: pentatricopeptide repeat domain 199 225 IPR002885 -
Bma06g00196 442 TIGRFAM PPR: pentatricopeptide repeat domain 144 176 IPR002885 -
Bma06g00196 442 TIGRFAM PPR: pentatricopeptide repeat domain 226 260 IPR002885 -
Bma06g00196 442 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 294 328 IPR002885 -
Bma06g00196 442 PANTHER OS02G0679200 PROTEIN 41 202 - -
Bma06g00196 442 PANTHER OS02G0679200 PROTEIN 201 442 - -
Bma06g00196 442 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 259 293 IPR002885 -
Bma06g00196 442 Pfam PPR repeat 152 173 IPR002885 -
Bma06g00196 442 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 141 175 IPR002885 -
Bma06g00196 442 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 41 202 - -
Bma06g00196 442 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 201 442 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00196 - - - vvi:100263983 608.601
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma03g00799 Bma06g00196 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00196 Bma-Chr6:2399954 Bma02g00206 Bma-Chr2:2240165 1.63E-19 dispersed
Bma06g00196 Bma-Chr6:2399954 Bma08g00950 Bma-Chr8:48488166 2.39E-19 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g681 Blo04g00746 Blo16g00207 . . . Bpe13g00264 Bma06g00196 . Cmo13g00935 Cmo18g00114 Cma10g00152 . Car10g00143 . Sed08g0171 Cpe20g00223 . Bhi02g00386 Tan09g2196 Cmetu02g0961 . Hepe09g0165 . . Cla06g01632 Cam06g1815 Cec06g1865 Cco06g1871 Clacu06g1773 Cmu06g1715 Cre06g2535 . Cone16ag0131 . . Lsi02g00346 Csa01g00818 Chy12g01298 Cme12g01723 . . . Bda14g00825 . . Bma03g00799 . Sed08g2543 Cmo10g00164 . Cma13g00908 Cma18g00144 Car13g00748 Car18g00138 Cpe09g01047 Cpe18g00824 Bhi08g01449 Tan05g2045 . . . . . Cla01g01399 Cam01g1461 Cec01g1502 . Clacu01g1485 Cmu01g1380 Cre01g1296 Lsi06g01514 Csa01g00185 Chy02g02548 Cme02g01934
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014283 1 1 1 1 0 0 1 1 1 1 0 0 1 1 1 1 0 1 1 1 1 1 1 1 0 0 1 1 1 0 22
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g00196 Bma_Chr06 FPKM 29.300934 25.944923 26.875696 26.62899 27.986767 34.523857 29.403473 35.797504 35.337517 38.902164