Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00200 CCGACCAAAATGAGCATCTCAGTTCAGCATCATCGATCTCCTTCCAACCCAAAGCATGAGGAGCAGGAGACCCCCCGAGATTTCATCTGCCCGATTTCTGGATCTTTAATGGCGGATCCAGTTGTTGTCTCTTCGGGCCATTCTTTCGAGCGAGTCTCCGTCCAAGTTTGCAGAGAATTTCGCTTCTCTCCCAAGCTTGAAGATGGCTCGAGAGCTGATTTCTCCACTGTTTTCGATAACAGAACCATGAAATCAACTATACTGAAGTGGTGCGATAGATCTGACATGGCGTATCCGCAGCCACCGGATCGAAGCTCCGTCGAAAGAATCGTCCGTTCGTTAATGGAGGAGGAGAGACCAAAGCCGTCCACGAGGGATTCATCGCTCTTGAGAAATATGCCGGAAAAACCGGAGTTGAAGCAGGTTTACGCAGACACTGTGTTAGCGCCTCGAGTTTACAAGCTTTACGGAGAATCGCCTGCCGGATGTTCTAGTCCAAGCTCTTCCTTACCGTTCACAACTCGACCGTCTTGTTACTCGTCTTCAACCTCGTCGGCTGAATTCGCTTCAGATGAAAATGGAGAACAATTACTCCTTAAGCTCGAGAGCTGCGATATGTTCGATCAAGAAGAAGGCGCCGATTCACTGAGAAGGATGACGAGGTCCAACGAGGAAGCTAGAATTACTCTCTGCACTCCTCCATTGCTTTCAGCTCTCAAAGCCCTAGTAACGTCGACATTTCCCAGAGTACAAATCAACGCCATAGCCTCGCTGGTTAATCTGTCTCTGCAAAACCCTAACAAGGTGAAGATTGTGAGATCTGGATTTATTCCAGTTCTGATCGAGATCTTGAGAGAGAACGCCGACGAGGCAGTTGAGCACGCGGTCGGAGCGCTTTTCAGCCTAGCTTTAGAGGACGAGAACAGAACGGCGATCGCGGCCCTCGGCGCTCTGCCATATCTGATGCAGGCGCTCCGATCGGAAAGAGAGCAGACTCGGAATGACTCTGCGCTCTGCTTGTACAATCTGACTCTCGTCAAGAGCAACCGAGTCAAACTCGTGAAACTCGGCGCCGTCCCGACTCTGCTATCAATGGTAAAATCTGGAAACTCGACGAACAGAGCTCTGCTCATTCTATGTAACCTAGCGGTTTGTCCTGAAGGAATATCGGCGCTTCTCGACGCAAATGCAGTCAGTTCGTTGGTGAAGATGCTGAGGGAGAACGAGTTGGATACCGAGTTAACTCGAGAGTATTGCGTTTCAGTACTGTACGGACTCAGCCATGGCGGGCTAAGATTCAAGGGGCTAGCGAGGGAGGCGAGGGCGGCGGAGGTTTTGAGAGCCGTGGAAGATAGGGGAACGGAGAGAGCGAGAGAGAAAGCTAGGAAAATACTGCACAACATGAGGGGGATAGAGGAAGACGATGACGGTGCAGGGAGAGAGCTGCAAGTCGACTCGGGAGGACTGAGTTGGACTAAGCACCGAGTTGGGGGGATCCCGAGGGATCTCTACCAACACAACACAACAAACTTTTAA 1536 50.98 PTKMSISVQHHRSPSNPKHEEQETPRDFICPISGSLMADPVVVSSGHSFERVSVQVCREFRFSPKLEDGSRADFSTVFDNRTMKSTILKWCDRSDMAYPQPPDRSSVERIVRSLMEEERPKPSTRDSSLLRNMPEKPELKQVYADTVLAPRVYKLYGESPAGCSSPSSSLPFTTRPSCYSSSTSSAEFASDENGEQLLLKLESCDMFDQEEGADSLRRMTRSNEEARITLCTPPLLSALKALVTSTFPRVQINAIASLVNLSLQNPNKVKIVRSGFIPVLIEILRENADEAVEHAVGALFSLALEDENRTAIAALGALPYLMQALRSEREQTRNDSALCLYNLTLVKSNRVKLVKLGAVPTLLSMVKSGNSTNRALLILCNLAVCPEGISALLDANAVSSLVKMLRENELDTELTREYCVSVLYGLSHGGLRFKGLAREARAAEVLRAVEDRGTERAREKARKILHNMRGIEEDDDGAGRELQVDSGGLSWTKHRVGGIPRDLYQHNTTNF 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2438582 2440117 + Bma022814.1 Bma06g00200 83702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00200 511 Pfam U-box domain 25 92 IPR003613 GO:0004842|GO:0016567
Bma06g00200 511 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 38 4 501 - -
Bma06g00200 511 SMART Ubox_2 27 90 IPR003613 GO:0004842|GO:0016567
Bma06g00200 511 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 99 IPR013083 -
Bma06g00200 511 PANTHER U BOX DOMAIN-CONTAINING 4 501 - -
Bma06g00200 511 Pfam Armadillo/beta-catenin-like repeat 306 344 IPR000225 GO:0005515
Bma06g00200 511 ProSiteProfiles U-box domain profile. 23 97 IPR003613 GO:0004842|GO:0016567
Bma06g00200 511 SUPERFAMILY ARM repeat 197 468 IPR016024 -
Bma06g00200 511 SMART arm_5 346 384 IPR000225 GO:0005515
Bma06g00200 511 SMART arm_5 305 345 IPR000225 GO:0005515
Bma06g00200 511 SMART arm_5 223 263 IPR000225 GO:0005515
Bma06g00200 511 SMART arm_5 264 304 IPR000225 GO:0005515
Bma06g00200 511 SMART arm_5 385 428 IPR000225 GO:0005515
Bma06g00200 511 MobiDBLite consensus disorder prediction 1 24 - -
Bma06g00200 511 CDD RING-Ubox 29 58 - -
Bma06g00200 511 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 275 317 IPR000225 GO:0005515
Bma06g00200 511 SUPERFAMILY RING/U-box 11 101 - -
Bma06g00200 511 Gene3D - 188 468 IPR011989 -
Bma06g00200 511 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 316 358 IPR000225 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00798 Bma-Chr3:7375461 Bma06g00200 Bma-Chr6:2438582 0 dispersed
Bma06g00200 Bma-Chr6:2438582 Bma08g00183 Bma-Chr8:2239876 9.33E-164 dispersed
Bma06g00487 Bma-Chr6:22870724 Bma06g00200 Bma-Chr6:2438582 1.62E-28 dispersed
Bma06g00199 Bma-Chr6:2426070 Bma06g00200 Bma-Chr6:2438582 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00200 - - zju:107407140 506.908