Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00212 TTTTCTAGCCCCGAGATTCTGCCAACCCCGTCCACCAATCCCTCTGTTGCTCCCTGGCTGATGGATTCTGGCGCCACCCACCACCTCACGCCTCATCCCTCTGCCCTCCAACACCCTCAACCCTACGCTGGAACATCGCAAATCGCCACTGCTGAAGGTAATTTACTTCCCATCTCCAAAATTGGTTATGTCATTCTTCCTTCTATCTCTCGGCCTCTCACCTTGAATATTGTCTGCCATTCTCCTCGTTTATCTCATAATTTGGTTGGTGTTCAAAAATTGTGCCAAGACAACTTTGTATATGTTGAGTTTCATCCAACGTTTTTCTTTGTCAAGGACAAACAGTCTCACCAGACTTTGCTCCGTGGTTCGCTCGTTAATGGACTCTACCAAGTTCTGCCTCCCTGGGAGGATATTGGGTTGCGGCCCAATCCCCGGAGCGGACAATATCTTGCTGGGAACGGGGTCGTTACACATCCCTCCTCTGCTGTTTTAAGGCGTGTCTTACAATCCAGCAATCTCCCCGTGTCCCAATCTCAAATACCTCAATTCTGTGCTTCCTGCTCGATGAGTAAAGCTCATCGCTTGCCGTTTCCAGTATCAAGCTCACATGCAAAATTTCCTTTTGATCTTGTACGCAGTGACATTTGGGGTCCATCCCCTGTAAATTCTATTACTAGTGTACGTTATATTGTTCTTTTTGTCGATGATTGTACTCGGTTCACTTGGTTGTTTCCATTAAAATTAAAAAGTGAAGTTTACCAAGTTTTTGTTAATTTCCATAAATTTGTTCTCACTCAGTTTGGAGTTAACATTAAAAGTGTTCAATCTAACGGGGGTGACGAATTCAAATCTCTATCTCTTTTATTCCAGTCTCTGGGCATTCTTCATCGTATATCTTGTCCATACACTCCTAATCAGAATGGTCGTGTTGAGCGAAAAAACTGTCATGTTGTTGAGACTGGACTTGCCCTCTTATTTCACTCTTCAGTTCCTCAACACTTCTGGCCTTATGCCTTTACGACAGCCACTACCTTAATCAACTTATTACCTACTCCTATTCTAGTACACAAATCCCTTTTTGAATGGCCAACTTCAGGAATCGGAGCTGAAACAGCAAGAGTACTCGCCAAGAGAGGAGTGACAATTGTAATGGCAGCTAGAGATTTGAAGAAGGCAGCTGAAACGAAGAAGAAAATTCAGAGAGAAACTCCAGAGGCTGAAATTATCGTCCTTGAATCCGATCTCAGCTCATTTGCATCAGTGACGAGGTTCTGTTCTTCATTTTTATCACTCGGCCTACCCCTCAACATTCTCATCAACAACGCCGGCACGTTTTCTAAAACTTTGGAGTTCTCCGAAGACAAGACCGAGATGACGTTTGCTACAAATTATTTGGGCCACTTTCTGCTGACGGAATTGTTGGTAGAGAAGATGGTGGAAACATCAGCAAAAACAGGAATCCAAGGGAGAATAATCAATGTCACCTCTGTTATTCACTCCTGGGTTAACAAGGGAAATGGCTTCTGCTTCAACCAAATGCTGAATCCAAACAAAATTAAATGCAGGTACAATGGCACGAAAGCTTATGCTCAGTCAAAGTTGGCTAATATTTTGCATGCAAAGGAAATGGCAAGGCAACTCGAGGCAAGAAATGCAAGAGTGACTATCAATGCAATTCACCCAGGGATTGTAAGAACTGCTATAATCAGAGCCCATAAAAGCTTTATCACAGGCATGAACTTCTTCTATTTTCTTTTCTTTTTCAATGTGATTGTGCAGGGTGCATCAACTACGTGCTATCTTGCTCTAAGCGCACAAGTAGAAGGAACAAGCGGAAAATACTTTGCAGATTGTAATGAATCCTACTGCTCACCTCTTGCAAATGATGAATCTGAAGCACGAAAGCTATGGATGCAAACTCAAACTTTAGTTCGAAGGCGACTGTCCAATCTGTCTGCCTAA 1965 43.16 FSSPEILPTPSTNPSVAPWLMDSGATHHLTPHPSALQHPQPYAGTSQIATAEGNLLPISKIGYVILPSISRPLTLNIVCHSPRLSHNLVGVQKLCQDNFVYVEFHPTFFFVKDKQSHQTLLRGSLVNGLYQVLPPWEDIGLRPNPRSGQYLAGNGVVTHPSSAVLRRVLQSSNLPVSQSQIPQFCASCSMSKAHRLPFPVSSSHAKFPFDLVRSDIWGPSPVNSITSVRYIVLFVDDCTRFTWLFPLKLKSEVYQVFVNFHKFVLTQFGVNIKSVQSNGGDEFKSLSLLFQSLGILHRISCPYTPNQNGRVERKNCHVVETGLALLFHSSVPQHFWPYAFTTATTLINLLPTPILVHKSLFEWPTSGIGAETARVLAKRGVTIVMAARDLKKAAETKKKIQRETPEAEIIVLESDLSSFASVTRFCSSFLSLGLPLNILINNAGTFSKTLEFSEDKTEMTFATNYLGHFLLTELLVEKMVETSAKTGIQGRIINVTSVIHSWVNKGNGFCFNQMLNPNKIKCRYNGTKAYAQSKLANILHAKEMARQLEARNARVTINAIHPGIVRTAIIRAHKSFITGMNFFYFLFFFNVIVQGASTTCYLALSAQVEGTSGKYFADCNESYCSPLANDESEARKLWMQTQTLVRRRLSNLSA 654
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2539717 2550553 + Bma022826.1 Bma06g00212 83714

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00212 654 Coils Coil 383 403 - -
Bma06g00212 654 Pfam short chain dehydrogenase 365 499 IPR002347 -
Bma06g00212 654 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 365 623 IPR036291 -
Bma06g00212 654 PRINTS Glucose/ribitol dehydrogenase family signature 530 549 IPR002347 -
Bma06g00212 654 PRINTS Glucose/ribitol dehydrogenase family signature 358 375 IPR002347 -
Bma06g00212 654 PRINTS Glucose/ribitol dehydrogenase family signature 434 445 IPR002347 -
Bma06g00212 654 PRINTS Glucose/ribitol dehydrogenase family signature 484 500 IPR002347 -
Bma06g00212 654 PRINTS Glucose/ribitol dehydrogenase family signature 553 570 IPR002347 -
Bma06g00212 654 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 530 549 IPR002347 -
Bma06g00212 654 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 434 445 IPR002347 -
Bma06g00212 654 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 490 498 IPR002347 -
Bma06g00212 654 Gene3D - 364 650 - -
Bma06g00212 654 MobiDBLite consensus disorder prediction 1 19 - -
Bma06g00212 654 CDD retinol-DH_like_SDR_c_like 365 638 - -
Bma06g00212 654 PANTHER NAD(P)-BINDING ROSSMANN-FOLD SUPERFAMILY PROTEIN 362 649 - -
Bma06g00212 654 MobiDBLite consensus disorder prediction 1 22 - -
Bma06g00212 654 PANTHER RETINOL DEHYDROGENASE 362 649 - -
Bma06g00212 654 Gene3D - 200 353 IPR036397 GO:0003676
Bma06g00212 654 ProSiteProfiles Integrase catalytic domain profile. 204 372 IPR001584 GO:0015074
Bma06g00212 654 SUPERFAMILY Ribonuclease H-like 205 355 IPR012337 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00212 - - - zju:107418424 410.223
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma03g00776 Bma06g00212 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00776 Bma-Chr3:7109893 Bma06g00212 Bma-Chr6:2539717 3.90E-164 dispersed
Bma06g00212 Bma-Chr6:2539717 Bma14g02056 Bma-Chr14:43906972 5.44E-77 dispersed
Bma02g00645 Bma-Chr2:17106826 Bma06g00212 Bma-Chr6:2539717 3.19E-83 transposed
Bma05g00681 Bma-Chr5:39689665 Bma06g00212 Bma-Chr6:2539717 4.87E-91 transposed
Bma07g00795 Bma-Chr7:23873493 Bma06g00212 Bma-Chr6:2539717 6.95E-07 transposed
Bma08g00343 Bma-Chr8:6198827 Bma06g00212 Bma-Chr6:2539717 5.61E-29 transposed
Bma11g00697 Bma-Chr11:16458724 Bma06g00212 Bma-Chr6:2539717 2.25E-18 transposed
Bma13g00615 Bma-Chr13:14498971 Bma06g00212 Bma-Chr6:2539717 1.15E-31 transposed
Bma14g01533 Bma-Chr14:30978306 Bma06g00212 Bma-Chr6:2539717 6.17E-22 transposed
Bma15g01048 Bma-Chr15:42143707 Bma06g00212 Bma-Chr6:2539717 2.56E-145 transposed
Bma03g00790 Bma-Chr3:7283347 Bma06g00212 Bma-Chr6:2539717 9.16E-165 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g794 Blo04g00726 . . . Bpe12g00629 Bpe13g00248 Bma06g00212 . Cmo13g00903 . Cma10g00111 . Car10g00100 . . Cpe20g00254 . . . . . . . . Cla06g01682 Cam06g1869 Cec06g1918 Cco06g1923 Clacu06g1824 Cmu06g1767 Cre06g2583 Cone2ag0923 Cone16ag0084 Cone13ag0157 Cone19ag0156 Lsi02g00396 . . . Blo13g00099 . Bda11g01661 Bda14g00802 . Bpe15g00646 Bma03g00776 . . Cmo10g00115 . Cma13g00871 . Car13g00713 . . Cpe18g00854 Bhi08g01646 . . Lac10g0476 . . . Cla01g01319 Cam01g1411 Cec01g1442 Cco01g1481 Clacu01g1384 Cmu01g1293 Cre01g1248 Lsi06g01573 Csa01g00128 Chy02g02599 Cme02g01995
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010928 1 1 0 5 2 3 0 1 1 0 0 1 0 0 0 0 3 0 0 0 0 1 0 0 0 0 0 0 0 0 19
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g00212 Bma_Chr06 FPKM 94.719765 97.973244 97.419991 101.43914 80.886887 64.131996 79.724426 120.335114 125.914078 127.818611