Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00216 ATGCATTCGTTAAGCTTTAAAGTTTTGTCTGATTTCACGGCTGGGAAGAGGAAATGTCTGCCAGGACGAGGAACGTGCGATTTTGCGGATTTGGAGGTTAGGTCTGGTAGGAAATTATTGGAGCGAGGAAAGACTTTGACTATAGCTTGTTCTTCGGGGAAGAATGGTAATGGAGGTGATCGGAGTTATAGCCAGGGAGCTAATTCGAGTACTAGTCGGAGCTCGTATTTGTCTCGGAGTCAGACCTATGCGCTTTTGAAGCAGCAATTAGAGGTTGCGGCCAAATCTGAGAATTATGAGGAAGCAGCGAGGATTCGTGACTCATTGAGGCTGTTTGAAGAGGAGGAGCCAGTGTTACGTCTTAGGAGACTGATGAAGGAAGCTATTGCAAATGAGAGGTTTGAGGAAGCTGCTCAGTATCGTGATAAGTTGAAGGAAATTTCTCCTCACACTCTTCTAAAGTGCACGAGCGATGCAACAACTTTGGGAATTAGGGTTCAAGTGAGGAGTGTGTACATAGAGGGCCGGAGTCAACCTTCAAGGGGTCAGTATTTTTTTGCCTACAGAATAAGGATTACCAATAATTCAGATCGTTCTGTTCAACTTCTCAGAAGACATTGGATTGTAACTGATGGTAATGGAAAAACAGAGAATATCTGGGGCATTGGAGTTATTGGAGAACAGCCGGTACTACTTCCTAAGGCTGGTTTTGAATATTCATCAGCATGCCCGTTACCTACTCCTAATGGCAGAATGGAAGGCGATTTCGAGGTGAAACACATTGATCGAGCGGGTGAGCAATCTTTCATCGTAGCAATTGCTCCTTTTTCTCTTTCCACTCTAGGAGATGACTCTGAAACCTTTTGA 867 44.41 MHSLSFKVLSDFTAGKRKCLPGRGTCDFADLEVRSGRKLLERGKTLTIACSSGKNGNGGDRSYSQGANSSTSRSSYLSRSQTYALLKQQLEVAAKSENYEEAARIRDSLRLFEEEEPVLRLRRLMKEAIANERFEEAAQYRDKLKEISPHTLLKCTSDATTLGIRVQVRSVYIEGRSQPSRGQYFFAYRIRITNNSDRSVQLLRRHWIVTDGNGKTENIWGIGVIGEQPVLLPKAGFEYSSACPLPTPNGRMEGDFEVKHIDRAGEQSFIVAIAPFSLSTLGDDSETF 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2573262 2575678 - Bma022830.1 Bma06g00216 83718

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00216 288 ProSiteProfiles UVR domain profile. 80 115 IPR001943 GO:0005515
Bma06g00216 288 SUPERFAMILY ApaG-like 160 279 IPR036767 -
Bma06g00216 288 SUPERFAMILY C-terminal UvrC-binding domain of UvrB 80 113 IPR036876 -
Bma06g00216 288 ProSiteProfiles ApaG domain profile. 158 285 IPR007474 -
Bma06g00216 288 ProSiteProfiles UVR domain profile. 115 150 IPR001943 GO:0005515
Bma06g00216 288 PANTHER OS05G0170800 PROTEIN 1 287 - -
Bma06g00216 288 MobiDBLite consensus disorder prediction 50 74 - -
Bma06g00216 288 Pfam UvrB/uvrC motif 86 114 IPR001943 GO:0005515
Bma06g00216 288 Pfam UvrB/uvrC motif 120 147 IPR001943 GO:0005515
Bma06g00216 288 Gene3D ApaG domain 154 284 IPR036767 -
Bma06g00216 288 SUPERFAMILY C-terminal UvrC-binding domain of UvrB 118 148 IPR036876 -
Bma06g00216 288 Pfam ApaG domain 176 259 IPR007474 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00216 - - - cmax:111495061 408.297
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g763 Blo04g00731 Blo16g00226 . . . Bpe13g00244 Bma06g00216 . Cmo13g00913 Cmo18g00131 . . . . . Cpe20g00247 . . . . . . . . . . . . . . . Cone2ag0911 Cone16ag0097 . . Lsi02g00378 Csa01g00857 Chy12g01263 Cme12g01689 . . Bda11g01657 Bda14g00808 . Bpe15g00640 . . Sed08g2516 . . Cma13g00884 Cma18g00173 Car13g00724 Car18g00164 Cpe09g01022 . Bhi08g01618 Tan05g2002 Cmetu12g1934 Lac10g0456 Hepe07g2222 . . Cla01g01304 Cam01g1426 Cec01g1459 . . Cmu01g1276 Cre01g1261 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010271 2 1 2 1 2 0 2 0 0 0 1 0 2 1 0 2 1 2 2 0 1 0 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g00216 Bma_Chr06 FPKM 6.430076 6.230437 7.212977 6.388145 6.307903 6.626757 6.412544 6.150284 5.934833 5.756388