Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00233 ATGCCTGAAATTACAGTGGCTGATGCTGATGAAGGAGCTGTAAATGGTTTCGGCGAAACTTCAACAACTGGGGTGGAAAATTCAGTTCAAACTCAGTCTCCAAGAAGAAATTTTAATCCGCCCAACCCTCCCAGTCAACGAACCGATCTTGTTATTGATGGGGTGGTAGATACTTCCATAGAGAGACTGTATGAGAATGTGTGTGATATGCAGAGCTCTGATCAATCTCCCTCGAGGCGAAGTTTTGGATCTGATGCAGACGAGTCTAGGATTGACTCAGAATTACATGATCTTGTTGGTGGGGAGATGAGTGAATTGAAAATAATTGAGGAAGAGATGGAGAAGCAGGAGGAGGATTTTCATAGCGATTTGAGTTTGAAGAGGGAGAGTTTATCTGGTGGAGGGAAATCAGGAAATATAGAGAAGACTCCATTGAAGAAAGCTTCTCAATCTCAGTTGGAGCATGTAACCTCGCCAAAATCGAGTCTCAAGGGGAAATCTTCGGTTGATAAAACTCATTCGACTAAAAAGAATGAGAAGAATCTGCCAGTTTCCATAGTGAATAAACAGCGAAATTCTCCTATGGGAGGCCACAAATTACAGAATAAAATTCCTGAATCAGAATTAGAAAATCCTGATCTTGGACCGCTTTTACTCAAGCAAGCAAGAGATCTTCTTTCTTCCGGTGAGAATACTCGTAAAGCTCTTGAACTCGCTCTTCGAGCATCGAAATCTTTCGAAATATGCGCAAAAGGGAAGTCTAGTTTAGAATTGGTCATGTCTTTGCATGTTACTGCTGCAATATACTGCAGTCTCGGTCAATACGATGAAGCCATCCCTCTTCTTGAGCGTTCAGTCGAAGTTCCGGTAATTGAGGAAGGACAAGAGCAAGCACTTGCTAAATTTGCAGGCCAAATGCAATTGGGGGATACGTATGCAATGATGGGTAAGCTGGAAAATTCAATAGTATGTTACACAACCGGGCTGGAAATCCAAAAGCAAGTTTTAGGAGAAACCGATCCTCAAGTGGGCGAGACTTGTCGATATCTTGCCGAGGCTCATGTTCAAGCCTTGCAATTCGACGAGGCCAAGAGAGTTTGTCAAATGGCTCTTGATATTCACAGAGAGAATAATGGGCCTGCCTCTCTTGAAGAGGCTGCAGATAGGAGGTTAATGGGTCTTATATGCGAAACAATGGGAGATCACGAAGCTGCTCTTGAGCATTTCGTACTGGCCAGTGTGGCAATGGTGGGAAATGGGCTGGAAATTGAGGTGGCTTCTGTGGATTCCAGCATTGGAGACGCCTACTTATCGTTATCTCGCTATGACGAAGCTGTTTTTGCTTATCAGAAGGCCCTCACATCTTTCAAAGCCACGAAAGGGGAGAATCACCCTACGGTTGGCTCTGTCTTTGTTCGATTGGCCGATTTATACAACAAGACTGGTAAAATGAGAGAATCTAAGTCATACTGCGAAAACGCCCTCCGAATATATGAAAAGCCGATACCCGGGATAGCTCCTGAGGAAATAGCTAGCGGTCTTACCAATGTCTCTGCAATTTACGAGTCGATGAACGAGCTCGACCAGGCTCTTAAGCTGCTGCAAAAAGCATTGAAGATATATATCGATGCTCCTGGCCATCAGAGCACCATTGCCGGAATCGAAGCTCAGATAGGTGTTATGTATTACATGATGGGGAACTACACTGAATCTTACAACTATTTGAAGAATGCAACTTCGAAGCTTCGAACCAGTCGAGAGAAGAAATCGGCCTTCTTTGGTATTGCCCTTAACCAAATGGGGCTTGCTTCTGTTCAGCTCTTCACTATAAATGAGGCCATAGAATTATTCGAAGAAGCCAGAAGTATATTAGAACATGAGCATGGCCCTTATCATCCTGACACTCTTGGAATATATAGCAACCTTGCAGGCACTTATGATGCAGTTGGCAGGTTGGATGATGCAATTGAGATATTGGAGCTTGTTGTTGGGATGAGAGAACAAAACCTCGGAACCGCGAATCCAGAAGTGGACGATGAGAAGAGGAGGTTAGCTGAGTTATTGAAAGAAGCGGGCAGAGTTCGGAATCGGGAAAGCAAAATCACTCGAGACTCTGCTCGATCGAGGATTCTCGTAAAAACGATGTAA 2148 44.04 MPEITVADADEGAVNGFGETSTTGVENSVQTQSPRRNFNPPNPPSQRTDLVIDGVVDTSIERLYENVCDMQSSDQSPSRRSFGSDADESRIDSELHDLVGGEMSELKIIEEEMEKQEEDFHSDLSLKRESLSGGGKSGNIEKTPLKKASQSQLEHVTSPKSSLKGKSSVDKTHSTKKNEKNLPVSIVNKQRNSPMGGHKLQNKIPESELENPDLGPLLLKQARDLLSSGENTRKALELALRASKSFEICAKGKSSLELVMSLHVTAAIYCSLGQYDEAIPLLERSVEVPVIEEGQEQALAKFAGQMQLGDTYAMMGKLENSIVCYTTGLEIQKQVLGETDPQVGETCRYLAEAHVQALQFDEAKRVCQMALDIHRENNGPASLEEAADRRLMGLICETMGDHEAALEHFVLASVAMVGNGLEIEVASVDSSIGDAYLSLSRYDEAVFAYQKALTSFKATKGENHPTVGSVFVRLADLYNKTGKMRESKSYCENALRIYEKPIPGIAPEEIASGLTNVSAIYESMNELDQALKLLQKALKIYIDAPGHQSTIAGIEAQIGVMYYMMGNYTESYNYLKNATSKLRTSREKKSAFFGIALNQMGLASVQLFTINEAIELFEEARSILEHEHGPYHPDTLGIYSNLAGTYDAVGRLDDAIEILELVVGMREQNLGTANPEVDDEKRRLAELLKEAGRVRNRESKITRDSARSRILVKTM 715
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2978589 2980865 + Bma022859.1 Bma06g00233 83735

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00233 715 SUPERFAMILY TPR-like 432 665 IPR011990 GO:0005515
Bma06g00233 715 Gene3D Tetratricopeptide repeat domain 594 703 IPR011990 GO:0005515
Bma06g00233 715 Coils Coil 524 544 - -
Bma06g00233 715 SMART tpr_5 636 669 IPR019734 GO:0005515
Bma06g00233 715 SMART tpr_5 426 459 IPR019734 GO:0005515
Bma06g00233 715 SMART tpr_5 302 335 IPR019734 GO:0005515
Bma06g00233 715 SMART tpr_5 344 377 IPR019734 GO:0005515
Bma06g00233 715 SMART tpr_5 386 419 IPR019734 GO:0005515
Bma06g00233 715 SMART tpr_5 259 292 IPR019734 GO:0005515
Bma06g00233 715 SMART tpr_5 594 627 IPR019734 GO:0005515
Bma06g00233 715 SMART tpr_5 552 585 IPR019734 GO:0005515
Bma06g00233 715 SMART tpr_5 468 501 IPR019734 GO:0005515
Bma06g00233 715 SMART tpr_5 511 544 IPR019734 GO:0005515
Bma06g00233 715 Coils Coil 677 697 - -
Bma06g00233 715 MobiDBLite consensus disorder prediction 81 100 - -
Bma06g00233 715 Pfam Tetratricopeptide repeat 266 288 IPR019734 GO:0005515
Bma06g00233 715 Pfam Tetratricopeptide repeat 511 547 - -
Bma06g00233 715 Gene3D Tetratricopeptide repeat domain 413 593 IPR011990 GO:0005515
Bma06g00233 715 MobiDBLite consensus disorder prediction 115 180 - -
Bma06g00233 715 SUPERFAMILY TPR-like 306 409 IPR011990 GO:0005515
Bma06g00233 715 Pfam Tetratricopeptide repeat 425 500 - -
Bma06g00233 715 Pfam Tetratricopeptide repeat 350 409 - -
Bma06g00233 715 Pfam Tetratricopeptide repeat 595 667 - -
Bma06g00233 715 ProSiteProfiles TPR repeat profile. 511 544 IPR019734 GO:0005515
Bma06g00233 715 Coils Coil 99 119 - -
Bma06g00233 715 MobiDBLite consensus disorder prediction 1 50 - -
Bma06g00233 715 Gene3D Tetratricopeptide repeat domain 208 412 IPR011990 GO:0005515
Bma06g00233 715 MobiDBLite consensus disorder prediction 68 100 - -
Bma06g00233 715 ProSiteProfiles TPR repeat profile. 426 459 IPR019734 GO:0005515
Bma06g00233 715 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 10 700 - -
Bma06g00233 715 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 10 700 - -
Bma06g00233 715 MobiDBLite consensus disorder prediction 143 165 - -
Bma06g00233 715 MobiDBLite consensus disorder prediction 16 46 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00233 - - - vvi:100255253 965.296
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00915 Bma-Chr4:12556656 Bma06g00233 Bma-Chr6:2978589 0 dispersed
Bma05g00892 Bma-Chr5:46717305 Bma06g00233 Bma-Chr6:2978589 4.04E-22 dispersed
Bma06g00233 Bma-Chr6:2978589 Bma14g01492 Bma-Chr14:30172635 0 dispersed
Bma06g00233 Bma-Chr6:2978589 Bma14g01525 Bma-Chr14:30792524 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g740 . . Bda06g00593 . . . Bma06g00233 . . . Cma10g00126 Cma11g00097 Car10g00117 Car11g00097 . . Cpe04g01552 Bhi02g00439 Tan09g2242 . . Hepe09g0198 . . Cla06g01660 Cam06g1845 Cec06g1896 Cco06g1901 Clacu06g1804 Cmu06g1745 Cre06g2564 Cone2ag0905 Cone16ag0107 . . . . . . . Blo15g00269 Bda11g01660 . Bpe07g00835 . . . . Cmo10g00132 Cmo11g00097 . . . . . Cpe18g00843 . . . . . . . . . . . . . . Lsi06g01550 Csa01g00154 Chy02g02576 Cme02g01966
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003461 3 3 3 3 3 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 1 2 2 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g00233 Bma_Chr06 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0