Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00236 ATGGCGAAGAATCTGTTCATTTTAATTTCTCTTTCACTGGCTTTCGTAGCTGGGCTGGTGGAGAGCTTAGAACTTCATGAAAAAGACCTAGAGTCCGAAGACAGCTTGTTAGATCTATACGAAAGATGGAGAAGCCATCACGGAGTGACGACGGAGCTGGAAGAGAAGAATGAGCGTTTCAACGTGTTCAAACAAAACGTTGCACATATTCATCGCTCAAACCAGATAGACAAGCCTTACAAGCTCGAACTGAACAAGTTTTCCGACATGACAAACGAAGAGTTTATGAGGGGATACACAGGTTTCAAGATTAGCCATCATAGGATGTTTCAGGAAACCCCAAGTGGGAATGGGAGCTTCCAGTACGAAAATGTAGAACTAGAAAGTGTCCCTCGCTCTGTAGATTGGAGGACGAAGGGTGCCGTTACTGCTGTTAAAGATCAAGGCCGTTGCGGAAGTTGTTGGGCATTCTCAGCTGTAGCAGCAGTGGAGGGTATAAACCAGTTGAAGACGACAAAGCTTGTATCTTTATCAGAACAACAATTAGTAGACTGTGACAATGGTCAAAACCAGGGCTGCAATGGAGGAATGATGGATCTTGCGTTTGATTACATCAAGCAAAACGGAGGGTTAACTGCTGAAACAAATTACCCTTACCAGGCTAGTGGCGGAACATGTGATTCTTTGAAGGTGAATTCTCCGCTAGTGTCCATAGATGGGCACGAAGATGTACCACAAAATAATGAAAATGCATTGCTTAAAGCAGTAGCTAATCAGCCTGTTTCTGTGGGCATTGATGCTGGCGGATCAGATTTTCAATTCTACTCAAAGGTATGCTCTTTTGTTTTTTTGGTATATAGCACCGAACTTGGGGGGGTGTTCACTGGACAATGCACGACCAATCTGAATCACGGAGTCGCGATTGTCGGATATGGAACCTCGACCGATGGGACGAAATATTGGATCGTAAGAAACTCGTGGGGAGAACAGTGGGGGGAGAACGGATACATAAGGATGGAACGTGGGATATCGGAGGAAGAAGGGTTGTGTGGTATAGCGATGATGGCTTCATATCCTCTCAAGAACAGTTCAAACTGA 1098 44.81 MAKNLFILISLSLAFVAGLVESLELHEKDLESEDSLLDLYERWRSHHGVTTELEEKNERFNVFKQNVAHIHRSNQIDKPYKLELNKFSDMTNEEFMRGYTGFKISHHRMFQETPSGNGSFQYENVELESVPRSVDWRTKGAVTAVKDQGRCGSCWAFSAVAAVEGINQLKTTKLVSLSEQQLVDCDNGQNQGCNGGMMDLAFDYIKQNGGLTAETNYPYQASGGTCDSLKVNSPLVSIDGHEDVPQNNENALLKAVANQPVSVGIDAGGSDFQFYSKVCSFVFLVYSTELGGVFTGQCTTNLNHGVAIVGYGTSTDGTKYWIVRNSWGEQWGENGYIRMERGISEEEGLCGIAMMASYPLKNSSN 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3153876 3155393 + Bma022862.1 Bma06g00236 83738

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00236 365 SUPERFAMILY Cysteine proteinases 33 360 IPR038765 -
Bma06g00236 365 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 148 159 IPR000169 -
Bma06g00236 365 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 320 339 IPR025661 -
Bma06g00236 365 SMART Inhibitor_I29_2 40 95 IPR013201 -
Bma06g00236 365 PANTHER KDEL-TAILED CYSTEINE ENDOPEPTIDASE CEP1 20 362 - -
Bma06g00236 365 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 302 312 IPR025660 -
Bma06g00236 365 PRINTS Papain cysteine protease (C1) family signature 148 163 IPR000668 GO:0006508|GO:0008234
Bma06g00236 365 PRINTS Papain cysteine protease (C1) family signature 304 314 IPR000668 GO:0006508|GO:0008234
Bma06g00236 365 PRINTS Papain cysteine protease (C1) family signature 320 326 IPR000668 GO:0006508|GO:0008234
Bma06g00236 365 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 20 362 - -
Bma06g00236 365 CDD Peptidase_C1A 131 359 IPR039417 -
Bma06g00236 365 Pfam Papain family cysteine protease 130 359 IPR000668 GO:0006508|GO:0008234
Bma06g00236 365 Gene3D Cysteine proteinases 14 362 - -
Bma06g00236 365 Pfam Cathepsin propeptide inhibitor domain (I29) 40 95 IPR013201 -
Bma06g00236 365 SMART pept_c1 130 360 IPR000668 GO:0006508|GO:0008234
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00236 K16292 CEP, CYSEP; KDEL-tailed cysteine endopeptidase [EC:3.4.22.-] - tcc:18605008 499.59
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma03g01289 Bma06g00236 CCT
Bma03g01289 Bma06g00236 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00236 Bma-Chr6:3153876 Bma08g00516 Bma-Chr8:27938636 4.84E-112 dispersed
Bma03g01289 Bma-Chr3:24086479 Bma06g00236 Bma-Chr6:3153876 4.30E-113 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g875 . Blo16g00242 . . . . Bma06g00236 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone19ag0184 . . . . . . Bda11g01632 . . Bpe15g00130 Bma03g01289 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000347 1 4 1 1 0 9 2 8 9 8 8 9 2 8 4 1 9 1 2 7 7 2 0 4 4 6 1 2 5 2 127
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g00236 Bma_Chr06 FPKM 14.677706 13.516137 2.467125 2.324647 17.339384 15.891397 15.13579 0.0 0.395607 0.126957