Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00238 TCCAGGCGGAACTTAGGTTACCTCTCCTGCGCGACCGGAAACCCCATCGACGACTGCTGGCGATGCGACACTAATTGGGAGAAGAATCGACAACGGCTAGCCGACTGCGCGATTGGGTTCGGCAAAAATGCCGTCGGAGGCCGCGACGGCCAGATCTACGTGGTCACTGACGACAGTGACGACGACCCAGTTACTCCAAAACCCGGTACACTCCGATACGCAGTGATTCAAGACGAACCGCTCTGGATAATATTCGCTAGAGACATGGTGATTACGCTGAAGGAAGAACTGATAATGAATTCTTTCAAAACCCTCGACGGGAGAGGGGCCAGCGTCCATATTTCCGGCGGACCTTGCATTACCATACAGTTTGTGACTAATATCATAATCCACGGTCTTCATATACACGATTGTAAGCAAGGAGGAAATGCTGAGGTGCGGGACTCCCCGCAGCACTACGGTTGGAGAACGATATCGGACGGCGACGGGGTTTCGATCTTCGGTGGAAGTCATGTTTGGGTTGATCATTGCTCTTTATCAAACTGCCAAGATGGTCTGATCGATGCGATTCACGGATCGACGGCTATAACGATTTCAAATAACTATTTGACGCATCATGATAAGGTAATGTTGTTAGGCCACAGCGATTCATACAGTCAGGACAAGAACATGCAAGTCACTATAGCCTTTAATCACTTTGGAGAAGGGCTAGTTCAAAGAATGCCCAGGTGTAGACATGGGTATTTCCATGTGGTCAACAATGACTATACCCATTGGGAAATGTACGCCATTGGAGGGAGTGCTGACCCTACTATCAACAGCCAAGGCAACCGATTTCTAGCGCCGGACGACCGATTCAGCAAAGAGGTGACGAAGCATGAGGATGCACCAGAGAGTGAGTGGAAGAGCTGGAATTGGAGGTCAGAGGGAGATTTGATGTTGAACGGTGCGTTTTTTACTCCGTCAGGGGCTGGAGCTTCTTCTAGCTATGCCAAAGCTTCCAGCTTGGGTGCTCGGCCGTCAACCCTAGTTGGTTCCCTTACAGTAACTGCGGGCGCACTCAACTGCAAAAAGGGCTCGCGTTGC 1086 50.55 SRRNLGYLSCATGNPIDDCWRCDTNWEKNRQRLADCAIGFGKNAVGGRDGQIYVVTDDSDDDPVTPKPGTLRYAVIQDEPLWIIFARDMVITLKEELIMNSFKTLDGRGASVHISGGPCITIQFVTNIIIHGLHIHDCKQGGNAEVRDSPQHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCQDGLIDAIHGSTAITISNNYLTHHDKVMLLGHSDSYSQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSADPTINSQGNRFLAPDDRFSKEVTKHEDAPESEWKSWNWRSEGDLMLNGAFFTPSGAGASSSYAKASSLGARPSTLVGSLTVTAGALNCKKGSRC 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3163295 3164603 - Bma031276 Bma06g00238 83740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00238 362 Gene3D - 13 355 IPR012334 -
Bma06g00238 362 PANTHER PECTATE LYASE 1 359 - -
Bma06g00238 362 SMART amb_all 88 285 IPR002022 -
Bma06g00238 362 PANTHER PECTATE LYASE 18-RELATED 1 359 IPR045032 GO:0030570
Bma06g00238 362 SUPERFAMILY Pectin lyase-like 14 353 IPR011050 -
Bma06g00238 362 PRINTS Pollen allergen Amb family signature 262 281 IPR018082 -
Bma06g00238 362 PRINTS Pollen allergen Amb family signature 304 328 IPR018082 -
Bma06g00238 362 PRINTS Pollen allergen Amb family signature 60 85 IPR018082 -
Bma06g00238 362 PRINTS Pollen allergen Amb family signature 160 181 IPR018082 -
Bma06g00238 362 PRINTS Pollen allergen Amb family signature 333 356 IPR018082 -
Bma06g00238 362 PRINTS Pollen allergen Amb family signature 96 112 IPR018082 -
Bma06g00238 362 PRINTS Pollen allergen Amb family signature 36 53 IPR018082 -
Bma06g00238 362 PRINTS Pollen allergen Amb family signature 240 259 IPR018082 -
Bma06g00238 362 Pfam Pectate lyase 123 279 IPR002022 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma03g00759 Bma06g00238 CCT
Bma03g00759 Bma06g00238 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g01050 Bma-Chr4:19126066 Bma06g00238 Bma-Chr6:3163295 0 dispersed
Bma06g00238 Bma-Chr6:3163295 Bma11g00322 Bma-Chr11:3033648 0 dispersed
Bma14g01573 Bma-Chr14:32423807 Bma06g00238 Bma-Chr6:3163295 8.85E-150 dispersed
Bma01g01699 Bma-Chr1:51761013 Bma06g00238 Bma-Chr6:3163295 6.48E-153 transposed
Bma13g00568 Bma-Chr13:12104081 Bma06g00238 Bma-Chr6:3163295 0 transposed
Bma03g00759 Bma-Chr3:6924428 Bma06g00238 Bma-Chr6:3163295 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00238 K01728 - nnu:104593013 702.975