Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00239 ATGCTTGAAAGAAGCACATTCATAGGCCTGGATTTCTCAAGAGGCCCAAAGCAATCAGAAGAAAACCAGGCCCATATAACAGTGAAGAACAGAGAAGCTGAGAGCCGACGAGAGAGAGAGGGCAGATTCAATGGAGGACGGAAACGAGGGAGAAACTGTAAGAATTTTGTGTTCGAAGCTCATCCTCTTCAGAAAAACGAAACCGGTCTCCAATGGTTGATTGGATCGCCGTTTTACTCTCCCTTTACTGTCGTCTCAACCTTTAAATGCATTCACAACTCACCATTGCAAGACTCTATCTCGCCTGATTACCAGAAGGAGTCAGCAGAAGATCTTCGAACGTTATTGTTAAAAGGATTTGAGATAATTGGAGCGATGATCATTGGAAAATTCAGTTTTGAACAACATGCTAAGGAGGCTATTGATGCTGCAAGGAAAATGAGGAACCTCCTTTCTCAAGGAAAAAAAGTACAAAGTGAACTGATGATAGGTGCCGTTGCGGATTCTGATTCTTCTGAAGTTCAATTCTTTCTCTCCAGGTCTGAGAATTCAACTAGACTTGATACTGTTACTTCTTTTAAGGACGAGAATGATCCCAATAAGTTTATTTGGGAGACTGGTTGCCTGCTCCGGTGCGAGCTTCCAGTCAAGTTGCCATTCTATTTTCCCTTGCACGATCCTCCAGAAATGGAGAAGATGTTCATTCGTTCTACTGAAGCAGTTGTTGCGAAGTTGCAAGATCCACTGGTGGTTTACCTGGTAGAACCATTAGGGAAAAGCTGCGATGAACGACCTCGACCAGTCATTGTGCGTGGTTCACAGCTTGATTTTCAGTCAAACCTCTCTAATTTTAAGCTTTTAACCGAAAACGCACTTGATACATGTGGTCACTTGTGTACTAGGAAAGCTGCCCCGACAACATTTTCTGCTGATAATTCAGATTCTGTCAAAGTCAGTGTTTTGCTTAATAGCTCAAAAAATTCAGCAACTCCTACTGCACCAGTGGTAGAATTTTTACCAGCTACGGAAGATGCCAGACTTATGGTTGTCAGTTTCAGGCTAGAAGTTCTATGTTATGCTGCCAAGGCTCTTCGTTTAATAGATGCAATTTCAATGCTTATCATCCCAGGACTAGTGGATCAGCTAATCTCAATGAGGAACACCATCTTGCCCAATCTCTTAAAAAAACATCCTCAGATACGTCCATATCACTTTTGTCCTCCAGGCTCTTTGCACCCAATTACGGTTATTTATGAATTGAGTTATGGGGAAACAGAAATGAAACAAGTTGACGTTAGAAAATCCCTGCATTTACGGTTGGGCCTACCTTTTGATCGTCCTCTTTTAAGAATCGCCAATGCCTTAGATTTGTCTAAAGAGGAGGATAGCATGACACGGAAGGGTAAAAGTTCTATCCTCAAAGATGTACACATTGGAATTCCGAGCAGTGGAGGTGGCTCTTTGTCTTTGGTTCAAGGTTCTTATGAATACTATCATTACCTTCAAAATGGTTACAATGATTCGGGCTGGGGTTGTGCTTACCGCTCTTTGCAGACTATCATATCATGGTTCAGACTCCAGCACTACACATCAGTAGATGTTCCATCACATAGGGAAATACAAGAGACATTGGTAGAGATTGGTGACAAAGATTCCTCTTTTATCGGCTCACGTGAATGGATTGGTGCCATCGAGTTAAGCTTTGTATTAGACAAACTGCTAGGTGTAAGTTGCAAAGTCATAAATGTTAGATCAGGAGCTGAACTTCCCGAAAAATGTCGAGAACTGGCCTTCCACTTTGAGAATCAAGGAACTCCTATTATGATTGGGGGAGGAGTTCTTGCATATACACTCTTGGGCATTGATTTCAACGAAACAAGTGGGGATTGCGCGTTTCTAATTCTCGATCCTCATTACACGGGTGGAGACGAGCACAAGAAGATCGTGAATGGCGGATGGTGTGCGTGGAAAAAGGCTGTTGATACCAAAGGAAAGAATTTCTTCTTGCATGATAAGTTCTATAATCTTCTGCTCCCACAGAGGCCCAACATGGTTTAG 2058 42.42 MLERSTFIGLDFSRGPKQSEENQAHITVKNREAESRREREGRFNGGRKRGRNCKNFVFEAHPLQKNETGLQWLIGSPFYSPFTVVSTFKCIHNSPLQDSISPDYQKESAEDLRTLLLKGFEIIGAMIIGKFSFEQHAKEAIDAARKMRNLLSQGKKVQSELMIGAVADSDSSEVQFFLSRSENSTRLDTVTSFKDENDPNKFIWETGCLLRCELPVKLPFYFPLHDPPEMEKMFIRSTEAVVAKLQDPLVVYLVEPLGKSCDERPRPVIVRGSQLDFQSNLSNFKLLTENALDTCGHLCTRKAAPTTFSADNSDSVKVSVLLNSSKNSATPTAPVVEFLPATEDARLMVVSFRLEVLCYAAKALRLIDAISMLIIPGLVDQLISMRNTILPNLLKKHPQIRPYHFCPPGSLHPITVIYELSYGETEMKQVDVRKSLHLRLGLPFDRPLLRIANALDLSKEEDSMTRKGKSSILKDVHIGIPSSGGGSLSLVQGSYEYYHYLQNGYNDSGWGCAYRSLQTIISWFRLQHYTSVDVPSHREIQETLVEIGDKDSSFIGSREWIGAIELSFVLDKLLGVSCKVINVRSGAELPEKCRELAFHFENQGTPIMIGGGVLAYTLLGIDFNETSGDCAFLILDPHYTGGDEHKKIVNGGWCAWKKAVDTKGKNFFLHDKFYNLLLPQRPNMV 685
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3173229 3178288 + Bma022864.1 Bma06g00239 83741

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00239 685 SUPERFAMILY Cysteine proteinases 504 641 IPR038765 -
Bma06g00239 685 MobiDBLite consensus disorder prediction 24 46 - -
Bma06g00239 685 ProSiteProfiles Rhodanese domain profile. 647 665 IPR001763 -
Bma06g00239 685 Pfam Peptidase family C78 489 677 IPR012462 -
Bma06g00239 685 MobiDBLite consensus disorder prediction 12 46 - -
Bma06g00239 685 Gene3D - 470 685 - -
Bma06g00239 685 PANTHER - 110 684 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00239 K01376 UFSP2; Ufm1-specific protease 2 [EC:3.4.22.-] - csv:101209572 857.055
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g881 . Blo16g00244 . . . . Bma06g00239 . Cmo13g00800 . . . . . . Cpe20g00338 . . . . . . . . . . . . . . . . Cone16ag0055 . . Lsi02g00285 Csa01g00757 Chy12g01210 Cme12g01632 . . Bda11g01629 . . . . . Sed01g1812 . . Cma13g00771 . Car13g00618 . . . Bhi08g01369 Tan05g2119 Cmetu12g0770 Lac10g0339 Hepe07g2309 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003460 2 1 2 2 1 1 2 1 1 1 1 1 2 2 2 2 1 2 1 1 2 2 2 2 2 1 2 2 2 2 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g00239 Bma_Chr06 FPKM 6.628959 6.672127 4.924932 4.824239 4.002406 7.554789 6.385612 3.454279 3.890936 4.597229