Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00240 ATGCAGCGGGTGGAAGTGACGAGCGAGAAGAACTTTCGAATGACCCTCTTATCAGATTTTTCAAGTCTCGTTCTCCAATTCAAGACCCACAACGCGAAGGAAAACTATCGTTGCAGAAGAATCGCCGCTCCTCCTGGCATCTCTCTGAGAGCGCCGAATTCCACGATCGAACCGAAAGCGGCCCTCAATGAGGAACTGGCGATTGAAGAAAAAACGAGAACAATTGGGGATGAGAGTTCGGAGTCAGTTTCCTCAGCAGAGGGCATTGTCGGAGATATTGTGCAGATTGCTAAAAACCTACCGGAGAATACGACGTTGGGGGAGGTTTTGGGAGACTACGAAGGAAGAATCAGTGAGAAAGAATGCGTGGAGGTGTTGAATTTGTTAGGCGAGGCAGGTATTTTGGTATGTTGTCTGTATTTCTTCGAATGGATGAGGAATCAGGAACCCTCTCTCGTTTCCCCTCGAGCGTGTTCAATTTTGTTTCCCCTGCTTGGAAGAGCTGGAATGGGCGAAGTTTTGATGGTCTTGTTCAGGAATTTACCGGTTAAAGAAGATCTAATGGACGTTCATGTCTATAATGCAGCAATATCTGGGCTTATGAGCTGTAAGAGGTTTGAGGATGCTTACGAGGTCTATGAAATAATGGAAACGAACAATATTCGTCCAGATCACGTGACATGTTCGATAATGATTACGATGATGAGGAAAACCGGCCGAAGTGCAAAAGAAGCATGGGACTACTTTGAGAAAATGAACAAGAAAGGAGTGAAATGGAGTCCGGAAGTTTTCGGTGCGATAATAAAGTCGTTTTGCGAGGAGGGTCTGAAGAGCCAAGCTCTTATCATTCAGTTGGAGATGAACAAGAAAGGGATTCCTTCAAATGCAATAGTTTTCAACACTCTGATGGACGCTTTCAATAAATCTAACCAAATAGAAGAAGTTGAAGGTCTTTTTGCCGAAATGAAAGGCAAAGGGATTAAGCCTACGACTGCAACTTTTAACATCTTGATGTCGGCATATAGTACGAGAATGCAACCCGAAATCGTCGAGAGGCTGCTCTTTGAAATGGAAGAAATGGGCTTGGAGCCAAATGTGAAGTCGTATACTTGCCTGATTAGTGCATACGGAAGGTTGAAGAAGACGAGTGACTTGGCTGCAAACGCATTTCTGAGGATGAAAAAACGGGGGATAAAACCGACTTCTCACTCCTACACGGCTCTTATTCATGCTTATTCTCTTGGTGGGTGGCATGATAAAGCCCTGATTGCATTCGAAAACATGAGGATTGAAAGGCTAAAACCATCAATGGAAACCTACACGGCCCTGCTGGACGCGTTCAGGCGAGCTGGAGATGCCGAAACTTTGATGAAAATTTGGAAAATGATGATCGAAGAGAAAATCAAAGGGTCGAGAGTTACTTTCAACATACTTGTCGACGGGTTTGCAAAACAAGGCCTCTACGCCGAAGCGAGAGATGTAATTCACGAATTCGGTAAGATCGGGGAAATCCCGACCGTGATGACATACAACATGCTTATAAACGCATATGCTCGAGGAGGGCAACACTCAAAGATGCCTCAGCTGTTGAAAGAGATGGAAAATTTGAACTTAAAACCAGATTCGGTAACATATTCGACGATGATTTATGCGTATATTCGAGTTCGGGATTTCAAGAGGGCGTTTTTTTATCACAAGAGTATGGTTAAGAGTGGGCAAGTGCCAGATGCAGGCTCTTACAGGAAGTTGAGGGAAATTTTGGATGTGAAAGCTGCAAAGAAGAACAAGAAGGACAGGAGTGCTATACTTGGAATAATCAATAGCAAAATGGGTTTGGTGAAAGCTAAGAAGGGTAAGAAAGATGAGTTCTGGAAGAACAAGAAAAAACATTTTACAACTGATAGAATTGGTCCACGTGGATAA 1923 43.73 MQRVEVTSEKNFRMTLLSDFSSLVLQFKTHNAKENYRCRRIAAPPGISLRAPNSTIEPKAALNEELAIEEKTRTIGDESSESVSSAEGIVGDIVQIAKNLPENTTLGEVLGDYEGRISEKECVEVLNLLGEAGILVCCLYFFEWMRNQEPSLVSPRACSILFPLLGRAGMGEVLMVLFRNLPVKEDLMDVHVYNAAISGLMSCKRFEDAYEVYEIMETNNIRPDHVTCSIMITMMRKTGRSAKEAWDYFEKMNKKGVKWSPEVFGAIIKSFCEEGLKSQALIIQLEMNKKGIPSNAIVFNTLMDAFNKSNQIEEVEGLFAEMKGKGIKPTTATFNILMSAYSTRMQPEIVERLLFEMEEMGLEPNVKSYTCLISAYGRLKKTSDLAANAFLRMKKRGIKPTSHSYTALIHAYSLGGWHDKALIAFENMRIERLKPSMETYTALLDAFRRAGDAETLMKIWKMMIEEKIKGSRVTFNILVDGFAKQGLYAEARDVIHEFGKIGEIPTVMTYNMLINAYARGGQHSKMPQLLKEMENLNLKPDSVTYSTMIYAYIRVRDFKRAFFYHKSMVKSGQVPDAGSYRKLREILDVKAAKKNKKDRSAILGIINSKMGLVKAKKGKKDEFWKNKKKHFTTDRIGPRG 640
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3180740 3183096 + Bma022865.1 Bma06g00240 83742

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00240 640 TIGRFAM PPR: pentatricopeptide repeat domain 473 497 IPR002885 -
Bma06g00240 640 TIGRFAM PPR: pentatricopeptide repeat domain 192 224 IPR002885 -
Bma06g00240 640 TIGRFAM PPR: pentatricopeptide repeat domain 509 542 IPR002885 -
Bma06g00240 640 TIGRFAM PPR: pentatricopeptide repeat domain 333 366 IPR002885 -
Bma06g00240 640 TIGRFAM PPR: pentatricopeptide repeat domain 298 330 IPR002885 -
Bma06g00240 640 TIGRFAM PPR: pentatricopeptide repeat domain 368 401 IPR002885 -
Bma06g00240 640 TIGRFAM PPR: pentatricopeptide repeat domain 226 260 IPR002885 -
Bma06g00240 640 TIGRFAM PPR: pentatricopeptide repeat domain 439 469 IPR002885 -
Bma06g00240 640 TIGRFAM PPR: pentatricopeptide repeat domain 543 577 IPR002885 -
Bma06g00240 640 Pfam Pentatricopeptide repeat domain 425 480 IPR002885 -
Bma06g00240 640 Pfam Pentatricopeptide repeat domain 352 412 IPR002885 -
Bma06g00240 640 Pfam PPR repeat family 505 552 IPR002885 -
Bma06g00240 640 Pfam PPR repeat family 295 341 IPR002885 -
Bma06g00240 640 Pfam PPR repeat family 189 234 IPR002885 -
Bma06g00240 640 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 506 540 IPR002885 -
Bma06g00240 640 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 541 575 IPR002885 -
Bma06g00240 640 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 471 505 IPR002885 -
Bma06g00240 640 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 401 435 IPR002885 -
Bma06g00240 640 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 189 223 IPR002885 -
Bma06g00240 640 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 224 259 IPR002885 -
Bma06g00240 640 Gene3D Tetratricopeptide repeat domain 503 572 IPR011990 GO:0005515
Bma06g00240 640 Gene3D Tetratricopeptide repeat domain 87 242 IPR011990 GO:0005515
Bma06g00240 640 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 295 329 IPR002885 -
Bma06g00240 640 PANTHER OS03G0856100 PROTEIN 66 633 - -
Bma06g00240 640 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 330 364 IPR002885 -
Bma06g00240 640 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 365 400 IPR002885 -
Bma06g00240 640 Gene3D Tetratricopeptide repeat domain 386 502 IPR011990 GO:0005515
Bma06g00240 640 Gene3D Tetratricopeptide repeat domain 243 385 IPR011990 GO:0005515
Bma06g00240 640 PANTHER - 66 633 - -
Bma06g00240 640 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 436 470 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00240 - - - bhj:120069367 858.596
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00240 Bma-Chr6:3180740 Bma04g01637 Bma-Chr4:52289270 2.54E-10 dispersed
Bma06g00240 Bma-Chr6:3180740 Bma01g00380 Bma-Chr1:3122549 4.44E-26 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g882 . Blo16g00245 . . . . Bma06g00240 . Cmo13g00801 Cmo18g00086 . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00459 Csa01g00915 Chy12g01209 Cme12g01631 . . Bda11g01628 . . . . . . . . Cma13g00772 Cma18g00109 Car13g00619 . . . . . . . . . . Cla03g00315 Cam03g0334 Cec03g0325 Cco03g0338 Clacu03g0335 Cmu03g0941 Cre03g0635 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003460 2 1 2 2 1 1 2 1 1 1 1 1 2 2 2 2 1 2 1 1 2 2 2 2 2 1 2 2 2 2 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g00240 Bma_Chr06 FPKM 1.613333 1.925336 2.02843 0.832382 7.876863 6.509703 6.338047 0.94357 0.0 0.792477