Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00245 ATGTTGCCTCGTCTTGAATTTGACGATGTGCGAGAAAAGCTCTCTACCCATTTCAGGCCTTTCCAGCGGTCGTTTCAGTTTTGGGTTCGTGTTGCGGACATTTACGCCGGATATAAGGCGTTTCAGCTTAGGGTGAGCTTCGAGAGAGATGTGCAGAAGCAGGAGGAGATGTGGGAGAGGCAACATGAGCTTGCGGCTGTGAAGATTTATGCCATGTGCTCCGACATGGGAGGTTTTTTTCTCAAGGTGGCTCAAGTTATTGGGAAACCAGATTTGGCTCCAGCAGCATGGGTTAGAAGGCTTGTCACATTGTGTGATCGAGCTCCGGAAACACCTTTTGATACAATTCAACTTGTGTTGGCAAAGGAGTTGGGAAAAAGTGTTGATGAAGTTTTTGAACGAATCGATGTAGATCCTATTGGTTCAGCTTCAATAGCTCAGGTTCATCGAGCAAGACTAAAAGGTTTTAAGAATGACGTTGTTATCAAGGTTCAACATCCTGGAGTTCAGGATCTAATGATGACAGACATCCATAACTTGCAAGCATTTGCCCTATACATGCAAAAGACTGACATTAAGTTTGATCTATTTTCTATAACTAAGGAAATGGAGAAACAGATTGGATATGAGTTTGACTTTTTGAGAGAGGCAAACGCAATGAAGAAAATTCGCCGTTTTCTTTACGATAACAACAAAAAGAGCCCAGTGATGGTGCCTCGTGTGATCCAGGATTTGGTTACTAGGAGGGTCTTGGTAATGGAATACATTAATGGAATCCCAATCCTCAATCTGGGGGATGAAATTGGGAGAAGAGGCATAAAGTCAAGCGGCAATGTTGCTGCAGCTGTGAAACAGAAAATTCTAAAAAGTTTGACGCTAGCTTATGGCCAAATGATTCTGAAGAGTGGTTTCTTCCATGCAGATCCCCATCCAGGAAATATCCTGATCTGTAAAGGTTCAGAGGTTGCTTTGCTCGACTATGGCCAAGTAAAGGATCTGCCTGAGAATCTGAGACTCGGTTATGCAAATCTTATTGTTGCCATTGCTGATGGTGATTTTGCAAGAGCATCAGAAAGCTTTAGGGATCTAGGGATAAATACCTTGAGCTTATGCAAAAACGAACAACAAGAATTTTTAAGGTTGGCACAAACGATGTTCGATACAAAATTGCCTCCCGGAGTCGTAATGCTTCAACCTTTCTCGGACGAATCATCGATAAAGAAATTTGAAGTTCAGACTTTCCCGGAGGAACTGTTTTCCATACTGAGGACAATTCAAATTTTGAGAGGACTAAGTGTTGGCCTGGGAATTAACCATTCATGTGCAGAGCAGTGGAGACCCATTGCAGAGGAAGCATTATCTCATGCTGGCAGGCTAAAAGGCCCTGTTCCGAAGGCGAGAGTCGGTTTGTTGAGAAGATTGTCGAGTTGGATTGGCAATTGA 1443 43.17 MLPRLEFDDVREKLSTHFRPFQRSFQFWVRVADIYAGYKAFQLRVSFERDVQKQEEMWERQHELAAVKIYAMCSDMGGFFLKVAQVIGKPDLAPAAWVRRLVTLCDRAPETPFDTIQLVLAKELGKSVDEVFERIDVDPIGSASIAQVHRARLKGFKNDVVIKVQHPGVQDLMMTDIHNLQAFALYMQKTDIKFDLFSITKEMEKQIGYEFDFLREANAMKKIRRFLYDNNKKSPVMVPRVIQDLVTRRVLVMEYINGIPILNLGDEIGRRGIKSSGNVAAAVKQKILKSLTLAYGQMILKSGFFHADPHPGNILICKGSEVALLDYGQVKDLPENLRLGYANLIVAIADGDFARASESFRDLGINTLSLCKNEQQEFLRLAQTMFDTKLPPGVVMLQPFSDESSIKKFEVQTFPEELFSILRTIQILRGLSVGLGINHSCAEQWRPIAEEALSHAGRLKGPVPKARVGLLRRLSSWIGN 480
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3260459 3267277 + Bma022873.1 Bma06g00245 83747

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00245 480 ProSiteProfiles Protein kinase domain profile. 134 478 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma06g00245 480 PANTHER - 8 460 - -
Bma06g00245 480 Pfam ABC1 atypical kinase-like domain 104 358 IPR004147 -
Bma06g00245 480 PANTHER ABC1 FAMILY PROTEIN 8 460 - -
Bma06g00245 480 SUPERFAMILY Protein kinase-like (PK-like) 106 330 IPR011009 -
Bma06g00245 480 Gene3D Transferase(Phosphotransferase) domain 1 126 343 - -
Bma06g00245 480 CDD ABC1_ADCK3-like 104 360 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00245 K08869 ADCK, ABC1; aarF domain-containing kinase - qsu:111995054 774.622
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01327 Bma-Chr1:18156106 Bma06g00245 Bma-Chr6:3260459 1.33E-50 dispersed
Bma03g00199 Bma-Chr3:1518826 Bma06g00245 Bma-Chr6:3260459 3.00E-40 dispersed
Bma06g00245 Bma-Chr6:3260459 Bma08g01084 Bma-Chr8:49874306 1.48E-29 dispersed
Bma08g00943 Bma-Chr8:48423580 Bma06g00245 Bma-Chr6:3260459 1.91E-21 dispersed
Bma06g00245 Bma-Chr6:3260459 Bma01g02436 Bma-Chr1:82007053 5.32E-38 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g913 . Blo16g00252 . . . Bpe13g00214 Bma06g00245 . Cmo13g00814 . . . . . . Cpe20g00328 . . . . . . . . . . . . . . . . Cone16ag0041 . . Lsi02g00475 Csa01g00933 Chy12g01194 Cme12g01617 . . Bda11g01613 . . . . . Sed08g2459 . . Cma13g00782 . Car13g00631 . . . Bhi08g01709 Tan05g2923 Cmetu12g0722 Lac10g0547 Hepe07g2153 . . Cla03g00331 Cam03g0347 Cec03g0338 Cco03g0353 Clacu03g0348 Cmu03g0954 Cre03g0647 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001915 4 2 2 2 2 1 4 2 1 2 1 1 3 2 2 3 1 6 3 1 2 2 2 2 2 1 2 2 5 2 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g00245 Bma_Chr06 FPKM 24.677551 29.053959 5.837992 6.652396 5.012119 4.119887 5.543169 6.040496 6.096166 6.694136