Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00247 ATGAGCGTTGCGGAATCATCGAGCTTCGTGAATGAAGGAACGATTCTCAGTCGGAGTAGCAGTACCAATAGGTTGAACAGCTTGGCCAGGCGGCAGATTGAAGATCAATTGCTGAGTTTTAATCAGAGGGTTGAGGCTGTCGACGGTGTAAGTTTCAAATCTGAAGACGGCGGAGGTTCGTCGGTGGAAGACGATTGCGGCGAGGAGATGAGGCTCTTTCATCTCCTCATCGCCTGCGCCGAAGCTGTAGCCTGTAGAGACAAGTCGTACGCCTCGATGCTTTTGTCCGATCTTAGATGCAAAGCTTTGGTGTTCGGGTCTTCGTTTCAGAGGGTTGCTTCCTGTTTCGTCCAAGGCCTAGCAGATCGACTAGCGCATATCGAGCCACTCGGGTCAATCGGGCGATTTTCACCGACCATGAATGTCATGAATTTTGTATCAGAAAGCAAGGAGGAAGCTCTGCGTTTGGTGTATGAGATTTGCCCGCAAATTCAGTTTGGTCATTTTGTGGCCAATTCTGCAATATTGGAAGCCATTGAGGGAGAGAATTATATCCACATTGTGGACTTGGGGATGACCCTTGGTTTAGGACTGGGCCAGCAATGGCTCAGCCTCTTCGACAGCCTCGCTATGCGCTCTGACCAGCAGCCTTGCCGGGTCCGAATCACTGGCATTGGACTCGACATCGAAAGATTCCAAATAATTGGCCAGAATATCGAAGCTCATGCCGAAAAGTTTGGAATCGATCTGGAATTCTCGGCAGTTGAAAGTTCGTTGGAAAACATGCGGATCGAAGACTTAAAACTCATGGAAAAGGAAGTTTTAATCGTCAATAGCATTCTTCAACTGCATTGTGTAGTGAAAGAGAGCAGAGGGGCTTTAAATTCAGTCCTCAAAATGTTCCATAAGCTTTCACCAAAGATCTTCACTTTGGTGGAGCAAGATTCCAATCATAATGGGCCATTTTTTCTTGGGAGATTCATGGAAGCTCTCCATTACTACTCTGCAATATTCGACTCACTCGACGCAACGCTGCCGAAATACGACACTCGGAGGGCGAAAATAGAGCATTTTTACTTTGCGGAGGAGATAAGAAACATAGTGAGCTGCGAGGGGCCGGGGAGGGTCGAAAGGCACGAGAAGGTGGAGCAATGGCGTAGGAGGATGAGCAGGGCTGGGTTTCAGGCTGCGCCCATGAGGATGGCTGGTGAGGCCAAGAAATGGCTTGGGAACAATAAGGATTTTGAAGGCCACACCATTGTTGAAGAGAAGGGGTGTTTGGTTCTTGGGTGGAAATCAAACCCCATTGTTGCAGCTTCTTGCTGGAAATGCTAG 1335 48.46 MSVAESSSFVNEGTILSRSSSTNRLNSLARRQIEDQLLSFNQRVEAVDGVSFKSEDGGGSSVEDDCGEEMRLFHLLIACAEAVACRDKSYASMLLSDLRCKALVFGSSFQRVASCFVQGLADRLAHIEPLGSIGRFSPTMNVMNFVSESKEEALRLVYEICPQIQFGHFVANSAILEAIEGENYIHIVDLGMTLGLGLGQQWLSLFDSLAMRSDQQPCRVRITGIGLDIERFQIIGQNIEAHAEKFGIDLEFSAVESSLENMRIEDLKLMEKEVLIVNSILQLHCVVKESRGALNSVLKMFHKLSPKIFTLVEQDSNHNGPFFLGRFMEALHYYSAIFDSLDATLPKYDTRRAKIEHFYFAEEIRNIVSCEGPGRVERHEKVEQWRRRMSRAGFQAAPMRMAGEAKKWLGNNKDFEGHTIVEEKGCLVLGWKSNPIVAASCWKC 444
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3284543 3286149 - Bma022875.1 Bma06g00247 83749

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00247 444 ProSiteProfiles GRAS family profile. 63 443 IPR005202 -
Bma06g00247 444 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 17 443 IPR005202 -
Bma06g00247 444 PANTHER DELLA PROTEIN RGL1-LIKE 17 443 - -
Bma06g00247 444 Pfam GRAS domain family 73 443 IPR005202 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00247 - - - tcc:18605049 597.816
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma03g01273 Bma06g00247 CCT
Bma03g01273 Bma06g00247 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00247 Bma-Chr6:3284543 Bma14g01407 Bma-Chr14:26610798 2.60E-96 dispersed
Bma03g01273 Bma-Chr3:22661822 Bma06g00247 Bma-Chr6:3284543 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g917 . Blo16g00254 . . . Bpe13g00212 Bma06g00247 . . . . . . . . . . . . . . . . . . . . . . . . . Cone16ag0038 . . . . . . . . Bda11g01611 . . Bpe15g00201 Bma03g01273 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006339 3 1 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 2 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57433 PF03514 GRAS 6.50E-109 CL0063 Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g00247 Bma_Chr06 FPKM 0.238756 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0