Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00250 ATGGCGGGCTCAGACTCTAGCCTCAGCGCTACCCCTTGCATGGATTCCAAGTCTGGTTTTTGTGCAAGTACCAAGATTTTTCACAGTCTCCGACCTCCGGTGCCTCTCCCGCCGATATCCGAACCACTCTCTTTGACCCAGTTCGCATTATCTCTTCTCCGGTTGTCCTCTCCGGCCACCAACACCACCGCCTTTATCGATTCCGACTCCGGCCACCACCTATCATACCCTTTATTCCTGCGGCGGGTACAAACTCTCAGCTCCAATCTTCGAGCCCTTACTTCTCTCTCCAAGGGAGATGTGGCTTTCATTCTGTCGCCTTCTTCTCTTCAGATTCCGGTCCTCTACTTTTCGCTGCTATTTCTGGGGGTGGTTGTTTGTCCGGCTAATCCACTCGGTTCCGACTCGGAAGTGGCTCACCAGATTCAACTAAGCAAACCCGTCATTGCTTTCGCGACCTCCTCTACAGCCAATAAGATTCCCAACCTCAAATTTGGTAGTATTCTGATCGACTCGCCGGATTTCTTCTCCATGATGAACGAAACTAAACCAGTAAACGGAAAAAACAGTCTTTCAGATCCGGTTGAGGTGAAACAGTCTGATTCCGCTGCGATTCTTTACTCCTCCGGCACAACCGGACGAGTCAAGGGCGTTTTACTGAGTCACCGAAACTTCATCGCCTTGATCGCCGGATTTTACGGTCGCAACCACCAAGAGGATACTGCTGAAACTCCGGCCAACCCCGTCTCATTGTTCACGTTGCCGCTCTTTCATGTTTTCGGTTTCTTCATGCTAGTACGGGCGATTTCAATGGGGGAGACGCTGGTTCTGATGCAAAGGTTTGATTTTGAGACATTGCTGAGAGTGGTGGAGAAATTCAGGGTCAACTACATGCCAGTTTCGCCTCCCCTTGTGGTGGCTCTGGTCAAGTCAGATTTGACGGCGAAATATGATCTTAGCTCGCTTCTGGTACTTGGGTCCGGCGGAGCTCCGCTTGGAGAAGGGATTGTTGACAGATTCAGGAAGAAATTTCCCACCGTGGAAATTTTACAGGGATACGGTTTGACTGAAAGCTCAGGAGGGGCGACGAGCTTAGTAGGGCCGGAAGAGTACAAGCATATAAGTTCAGTGGGAAAATTGGCTGAAAATATGGAAGCCAAGATAGTAGACGCCACGACCGCAGAGGCATTGCCTCCTGGACAGAAAGGCGAGCTGTGGCTCCGAGGCCCCACGATCATGCAAGGCTACGTCGGAGATGACGAAGCAACTTCTGCAACCTTGGATCCAGAAGGATGGCTGAAGACTGGTGATCTCTGTTATTTCGATTCAGATGGTTACCTCTACATTGTTGATCGATTGAAGGAATTGATAAAGTACAAGGCATATCAGGTACCCCCCGCCGAATTGGAGCATTTACTTCAGTCCAATTCCGAGATTGCAGATGCTGCTGTGATTCCGTATCCAGACGAAGATGCCGGAGAAATCCCCATGGCGTATGTAGTACGAAAGCCAGGAAGCAATATCACGGAGGCCCAACTTATAGATTTCATCGCAAAACAGGTTGCGCCATACAAGAAAATACGAAGAATAGCTTTCATAAACTCCATCCCGAAATCTCCTGCCGGAAAGATATTGAGGAGGGAGCTTGTCCAACATGCTCTTTCTAGTGGTTCGTCAAAGCTGTAA 1686 49.58 MAGSDSSLSATPCMDSKSGFCASTKIFHSLRPPVPLPPISEPLSLTQFALSLLRLSSPATNTTAFIDSDSGHHLSYPLFLRRVQTLSSNLRALTSLSKGDVAFILSPSSLQIPVLYFSLLFLGVVVCPANPLGSDSEVAHQIQLSKPVIAFATSSTANKIPNLKFGSILIDSPDFFSMMNETKPVNGKNSLSDPVEVKQSDSAAILYSSGTTGRVKGVLLSHRNFIALIAGFYGRNHQEDTAETPANPVSLFTLPLFHVFGFFMLVRAISMGETLVLMQRFDFETLLRVVEKFRVNYMPVSPPLVVALVKSDLTAKYDLSSLLVLGSGGAPLGEGIVDRFRKKFPTVEILQGYGLTESSGGATSLVGPEEYKHISSVGKLAENMEAKIVDATTAEALPPGQKGELWLRGPTIMQGYVGDDEATSATLDPEGWLKTGDLCYFDSDGYLYIVDRLKELIKYKAYQVPPAELEHLLQSNSEIADAAVIPYPDEDAGEIPMAYVVRKPGSNITEAQLIDFIAKQVAPYKKIRRIAFINSIPKSPAGKILRRELVQHALSSGSSKL 561
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3438898 3441694 + Bma022880.1 Bma06g00250 83752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00250 561 Gene3D - 455 555 IPR045851 -
Bma06g00250 561 Pfam AMP-binding enzyme 61 459 IPR000873 -
Bma06g00250 561 Pfam AMP-binding enzyme C-terminal domain 468 543 IPR025110 -
Bma06g00250 561 ProSitePatterns Putative AMP-binding domain signature. 205 216 IPR020845 -
Bma06g00250 561 Gene3D - 33 454 IPR042099 -
Bma06g00250 561 PANTHER 4-COUMARATE--COA LIGASE-LIKE 9 27 551 - -
Bma06g00250 561 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 27 551 - -
Bma06g00250 561 CDD 4CL 37 549 - -
Bma06g00250 561 SUPERFAMILY Acetyl-CoA synthetase-like 60 554 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00204 Bma-Chr5:5710160 Bma06g00250 Bma-Chr6:3438898 1.84E-164 dispersed
Bma06g00250 Bma-Chr6:3438898 Bma07g01477 Bma-Chr7:50405268 1.75E-136 dispersed
Bma06g00250 Bma-Chr6:3438898 Bma14g00445 Bma-Chr14:5144008 1.52E-143 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00250 K01904 - csv:101211791 751.895