Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00254 ATGCTGATAAGATTCTTAATTTCAAATCAGGAGGCGAAGGTCCATAAGAAGATGAAGGCACTTATTCTGGTTGGAGGATTTGGGACGCGGTTGAGGCCGCTGACTCTCAGTTTCCCCAAACCACTCGTTGATTTTGCCAATAAGCCCATGATTCTGCATCAGATAGAGGCTCTCAAAGCTATTGGAGTAACTGAAGTGGTTTTGGCCATCAACTATCAACCCGAGGTGATGTTGAATTTTTTGAAGGATTTTGAAGCAAAGCTTGGGATCAAGATCACATGTTCTCAGGAAACAGAGCCGCTCGGTACTGCCGGTCCTTTGGCTCTTGCGAGAGACAAGCTTATCGATGATTCTGGCGAACCATTTTTTGTTCTGAACAGTGATGTTATCAGTGAGTACCCCCTCAAAGAAATGATCGAGTTCCATAAATCCCACGGAGGTGAAGCTTCAATCATGGTTACCAAGGTTGATGAGCCATCAAAATATGGGGTGGTTGTAATGGAAGAATCATCTGGAAAGGTGGAGAGATTTGTAGAGAAACCAAAACTATTCGTGGGTAATAAGATCAATGCCGGAATTTATCTATTGAACCCGTCTGTTCTTGATCGAATCCAGCTACGCCCGACTTCGATCGAGAAAGAAATCTTCCCAAAAATTGCAGCAGAGGAGAAGCTCTATGCAATGGTTTTACCTGGATTCTGGATGGACATTGGACAGCCAAAAGACTACATTTCAGGCCTCAGACTCTACTTAGACTCCTTAAAGAAGAAATCTTCACCAAAACTGGCATCAGGGCCGCACATCGTGGGCAACGTAATAGTCGACGAAACCGCAAAAATCGGCGAGGGATGTCTGATCGGTCCCGACGTGGCAGTGGGTCCAGGCTGTGTGATCGAGTCAGGAGTGAGGCTCTCTCGCTGCACGATCATGCGGGGAGTTCGAGTCAAGAACCATGCCTGCATTTCGAGCAGCATAATTGGGTGGCACTCGACCGTCGGACAGTGGGCCAGGGTCGAAAACATGACCATTCTGGGAGAAGATGTTCATGTGGGTGATGAAGTTTACAGCAATGGAGGGGTTGTGTTGCCTCACAAAGAAATCAAATCTAGCATTTTGAAGCCAGAAATAGTTATGTGA 1137 46.26 MLIRFLISNQEAKVHKKMKALILVGGFGTRLRPLTLSFPKPLVDFANKPMILHQIEALKAIGVTEVVLAINYQPEVMLNFLKDFEAKLGIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKEMIEFHKSHGGEASIMVTKVDEPSKYGVVVMEESSGKVERFVEKPKLFVGNKINAGIYLLNPSVLDRIQLRPTSIEKEIFPKIAAEEKLYAMVLPGFWMDIGQPKDYISGLRLYLDSLKKKSSPKLASGPHIVGNVIVDETAKIGEGCLIGPDVAVGPGCVIESGVRLSRCTIMRGVRVKNHACISSSIIGWHSTVGQWARVENMTILGEDVHVGDEVYSNGGVVLPHKEIKSSILKPEIVM 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3495570 3497484 + Bma022885.1 Bma06g00254 83756

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00254 378 SUPERFAMILY Nucleotide-diphospho-sugar transferases 17 329 IPR029044 -
Bma06g00254 378 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 17 250 IPR029044 -
Bma06g00254 378 PANTHER SUGAR-1-PHOSPHATE GUANYL TRANSFERASE 12 378 - -
Bma06g00254 378 CDD M1P_guanylylT_B_like_N 18 251 IPR045233 GO:0004475|GO:0005525|GO:0009298
Bma06g00254 378 Pfam Nucleotidyl transferase 19 246 IPR005835 GO:0009058|GO:0016779
Bma06g00254 378 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE FAMILY PROTEIN-RELATED 12 378 - -
Bma06g00254 378 Pfam Bacterial transferase hexapeptide (six repeats) 278 310 IPR001451 -
Bma06g00254 378 Gene3D Hexapeptide repeat proteins 253 373 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00254 K00966 GMPP; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] - egt:105977628 670.618
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma06g00254 Bma08g00186 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01012 Bma-Chr1:10328796 Bma06g00254 Bma-Chr6:3495570 5.19E-58 dispersed
Bma06g00254 Bma-Chr6:3495570 Bma08g00186 Bma-Chr8:2257702 2.89E-55 dispersed
Bma03g01264 Bma-Chr3:21627661 Bma06g00254 Bma-Chr6:3495570 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g682 . . Bda06g00574 . Bpe12g00576 Bpe13g00205 Bma06g00254 . . . . . . . Sed08g0170 . Cpe04g01534 Bhi02g00389 Tan09g2197 Cmetu05g0932 . Hepe09g0166 . . Cla06g01633 Cam06g1816 Cec06g1866 . Clacu06g1774 Cmu06g1716 Cre06g2536 . . Cone13ag0117 Cone19ag0119 . . . . Blo13g00041 . Bda11g01604 . Bpe07g00816 . . Bma08g00186 . Cmo10g00163 . . . . . . . . . . . . . . . . . . . . . Lsi06g01515 Csa01g00184 Chy02g02549 Cme02g01935
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004936 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 3 3 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g00254 Bma_Chr06 FPKM 3.188653 3.135635 8.039616 7.249474 5.077165 5.671956 5.221547 8.336778 7.64114 7.756882