Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00261 ATGGATGCCTTAGATTCCGTTGTCGATCCTCTCAGAGAGTTCGCCAAAGACAGCGTTCGTCTCGTTAAGAGGTGCCACAAGCCTGATCGCAAAGAATTTACCAAGGTTGCCTTTCGCACGGCGATTGGCTTTGTCGTGATGGGCTTTGTTGGATTCTTCGTCAAGTTGATCTTCATTCCGATCAATAACATCATCGTTGGTTCTGGTTAG 210 47.14 MDALDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIPINNIIVGSG 69
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3602433 3602766 - Bma022892.1 Bma06g00261 83763

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00261 69 ProSitePatterns Protein secE/sec61-gamma signature. 14 42 IPR001901 GO:0006605|GO:0006886|GO:0016020
Bma06g00261 69 Hamap Protein translocase subunit SecE [secE]. 9 64 IPR001901 GO:0006605|GO:0006886|GO:0016020
Bma06g00261 69 SUPERFAMILY Preprotein translocase SecE subunit 5 65 IPR023391 -
Bma06g00261 69 Pfam SecE/Sec61-gamma subunits of protein translocation complex 13 65 IPR001901 GO:0006605|GO:0006886|GO:0016020
Bma06g00261 69 Gene3D Preprotein translocase SecE subunit 7 68 IPR023391 -
Bma06g00261 69 TIGRFAM secE_euk_arch: protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic 8 66 IPR008158 GO:0008320|GO:0015031|GO:0016020
Bma06g00261 69 PANTHER SEC61 GAMMA SUBUNIT 1 69 - -
Bma06g00261 69 PANTHER PROTEIN TRANSPORT PROTEIN SEC61 SUBUNIT GAMMA-3 1 69 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00261 K07342 SEC61G, SSS1, secE; protein transport protein SEC61 subunit gamma and related proteins - ncol:116246856 129.028
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma03g01251 Bma06g00261 CCT
Bma03g01251 Bma06g00261 ECH
Bma06g00261 Bma12g01083 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00253 Bma-Chr6:3491459 Bma06g00261 Bma-Chr6:3602433 4.61E-45 proximal
Bma09g00635 Bma-Chr9:43733801 Bma06g00261 Bma-Chr6:3602433 4.61E-45 transposed
Bma12g01083 Bma-Chr12:43126557 Bma06g00261 Bma-Chr6:3602433 2.14E-44 transposed
Bma03g01251 Bma-Chr3:20829954 Bma06g00261 Bma-Chr6:3602433 1.07E-36 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g101 . Blo16g00272 Bda06g00725 . Bpe12g00479 Bpe13g00200 Bma06g00261 Bma12g01083 Cmo13g00841 Cmo18g00222 . . . . . Cpe20g00303 . Bhi02g00520 . . . . . . . . . . . . . Cone2ag0981 Cone16ag0015 Cone13ag0226 Cone19ag0211 Lsi02g00510 Csa01g00972 Chy12g01161 Cme12g01585 . Blo15g00206 Bda11g01596 Bda14g01358 Bpe07g00892 Bpe15g00222 Bma03g01251 . Sed08g2430 . . Cma13g00811 Cma18g00314 Car13g00657 Car18g00233 Cpe09g00957 . Bhi08g01503 Tan05g2975 Cmetu12g2007 Lac10g0589 Hepe07g2115 . . Cla03g00359 Cam03g0379 Cec03g0365 . Clacu03g0378 Cmu03g0983 Cre03g0675 Lsi06g01644 Csa01g00053 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001129 5 5 4 4 2 2 3 1 3 2 2 2 3 2 2 3 1 4 3 1 3 2 2 1 2 2 3 2 2 2 75
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g00261 Bma_Chr06 FPKM 19.674379 18.032183 16.35861 14.877417 11.640716 12.358496 12.749813 7.149866 7.54371 8.488671