Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00262 ATGGAGAGCAACCAGCAAGCTCAGTCCTCTCCGTACCCACCTGCACAGCCTCCTCCGCCGCCTCCTCCTCAGCCGTCTCAATTTCATAACCTTCTCCAGCAGCAGCAGCAGCAGCTCCAGATGTTCTGGTCCTACCAGCGCCAAGAAATCGATCAGGTTAACGAGTTTAAAAATCACCAGTTACCCTTGGCTCGAATCAAGAAGATCATGAAAGCAGATGAGGATGTGCGTATGATCTCCTCAGAAGCTCCGATTCTGTTTGCCAAGGCCTGCGAGCTCTTCATCCTGGAACTCACGATTAGGTCGTGGCTTCACGCGGAGGAAAATAAGAGGAGGACTCTGCAGAAGAATGATATATCGGCAGCGATTACGAGGACTGATATCTTTGATTTTTTGGTGGATATTGTACCGAGAGATGAGATCAAGGATGAGGCTGGGTTGGAGAGTGTGGTTGGGGCTACTGCTAGTGGCGTACCCTACTATTACCCTCCTTTAGGACAGCCGGCTGGGACTCCGTCTGGGATGATGATAGGAAGGCCAGCAATGGATCCCACCGGAATGTACATGCAGCCTCCGTCTCAAGCGTGGCAGTCAGTATGGCAGGCGCCGCCGGAGGATGGGACGTATGGGAGCGGCGGAAACACTGGGCTTGGCAATCTTAATGGACAAAGGTACTTGATTTGCTTCTGCTGTTTTTTTCGATTTGGCAATGATGTTTTTGTGTTAATCTGCGTCTGGGTTGGATTTATTTTGATAAATTATTCAAAAAATTCGATTATGGAAGGGGATTGCAGTTTGATTTGGCTGAAAGAATTATTTTTTCTTTGA 828 48.67 MESNQQAQSSPYPPAQPPPPPPPQPSQFHNLLQQQQQQLQMFWSYQRQEIDQVNEFKNHQLPLARIKKIMKADEDVRMISSEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDISAAITRTDIFDFLVDIVPRDEIKDEAGLESVVGATASGVPYYYPPLGQPAGTPSGMMIGRPAMDPTGMYMQPPSQAWQSVWQAPPEDGTYGSGGNTGLGNLNGQRYLICFCCFFRFGNDVFVLICVWVGFILINYSKNSIMEGDCSLIWLKELFFL 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3628284 3629111 - Bma022894.1 Bma06g00262 83764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00262 275 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 60 123 IPR003958 -
Bma06g00262 275 Gene3D Histone, subunit A 26 138 IPR009072 GO:0046982
Bma06g00262 275 MobiDBLite consensus disorder prediction 11 27 - -
Bma06g00262 275 SUPERFAMILY Histone-fold 18 132 IPR009072 GO:0046982
Bma06g00262 275 MobiDBLite consensus disorder prediction 1 28 - -
Bma06g00262 275 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 3 223 - -
Bma06g00262 275 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-4 3 223 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00010 Bma-Chr1:250604 Bma06g00262 Bma-Chr6:3628284 4.06E-08 dispersed
Bma06g00262 Bma-Chr6:3628284 Bma08g00818 Bma-Chr8:45893581 1.29E-61 dispersed
Bma06g00262 Bma-Chr6:3628284 Bma03g01251 Bma-Chr3:20829954 1.80E-129 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57434 PF00808 CBFD_NFYB_HMF 8.70E-18 CL0012 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00262 - - csv:101213576 341.658