Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00262 ATGGAGAGCAACCAGCAAGCTCAGTCCTCTCCGTACCCACCTGCACAGCCTCCTCCGCCGCCTCCTCCTCAGCCGTCTCAATTTCATAACCTTCTCCAGCAGCAGCAGCAGCAGCTCCAGATGTTCTGGTCCTACCAGCGCCAAGAAATCGATCAGGTTAACGAGTTTAAAAATCACCAGTTACCCTTGGCTCGAATCAAGAAGATCATGAAAGCAGATGAGGATGTGCGTATGATCTCCTCAGAAGCTCCGATTCTGTTTGCCAAGGCCTGCGAGCTCTTCATCCTGGAACTCACGATTAGGTCGTGGCTTCACGCGGAGGAAAATAAGAGGAGGACTCTGCAGAAGAATGATATATCGGCAGCGATTACGAGGACTGATATCTTTGATTTTTTGGTGGATATTGTACCGAGAGATGAGATCAAGGATGAGGCTGGGTTGGAGAGTGTGGTTGGGGCTACTGCTAGTGGCGTACCCTACTATTACCCTCCTTTAGGACAGCCGGCTGGGACTCCGTCTGGGATGATGATAGGAAGGCCAGCAATGGATCCCACCGGAATGTACATGCAGCCTCCGTCTCAAGCGTGGCAGTCAGTATGGCAGGCGCCGCCGGAGGATGGGACGTATGGGAGCGGCGGAAACACTGGGCTTGGCAATCTTAATGGACAAAGGTACTTGATTTGCTTCTGCTGTTTTTTTCGATTTGGCAATGATGTTTTTGTGTTAATCTGCGTCTGGGTTGGATTTATTTTGATAAATTATTCAAAAAATTCGATTATGGAAGGGGATTGCAGTTTGATTTGGCTGAAAGAATTATTTTTTCTTTGA 828 48.67 MESNQQAQSSPYPPAQPPPPPPPQPSQFHNLLQQQQQQLQMFWSYQRQEIDQVNEFKNHQLPLARIKKIMKADEDVRMISSEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDISAAITRTDIFDFLVDIVPRDEIKDEAGLESVVGATASGVPYYYPPLGQPAGTPSGMMIGRPAMDPTGMYMQPPSQAWQSVWQAPPEDGTYGSGGNTGLGNLNGQRYLICFCCFFRFGNDVFVLICVWVGFILINYSKNSIMEGDCSLIWLKELFFL 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3628284 3629111 - Bma022894.1 Bma06g00262 83764

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00262 275 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 60 123 IPR003958 -
Bma06g00262 275 Gene3D Histone, subunit A 26 138 IPR009072 GO:0046982
Bma06g00262 275 MobiDBLite consensus disorder prediction 11 27 - -
Bma06g00262 275 SUPERFAMILY Histone-fold 18 132 IPR009072 GO:0046982
Bma06g00262 275 MobiDBLite consensus disorder prediction 1 28 - -
Bma06g00262 275 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 3 223 - -
Bma06g00262 275 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-4 3 223 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00262 - - - csv:101213576 341.658
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00010 Bma-Chr1:250604 Bma06g00262 Bma-Chr6:3628284 4.06E-08 dispersed
Bma06g00262 Bma-Chr6:3628284 Bma08g00818 Bma-Chr8:45893581 1.29E-61 dispersed
Bma06g00262 Bma-Chr6:3628284 Bma03g01251 Bma-Chr3:20829954 1.80E-129 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma03g01251 CCT,ECH 53 237 CCAAT-HAP5 Transcription Factor Family AT3G48590 76.4 6.2e-73 270.8
Bma06g00262 . 39 223 CCAAT-HAP5 Transcription Factor Family AT3G48590 71.7 2.1e-65 245.7
Bma08g00818 . 61 196 CCAAT-HAP5 Transcription Factor Family AT3G48590 71.5 1.5e-50 196.4
Bma14g01344 . 73 226 CCAAT-HAP5 Transcription Factor Family AT3G48590 66.0 3.7e-49 191.8
Bma14g01344 . 23 168 CCAAT-HAP5 Transcription Factor Family AT1G08970 74.2 1.1e-50 196.8
Bma08g00818 . 5 159 CCAAT-HAP5 Transcription Factor Family AT1G08970 67.1 1.2e-47 186.8
Bma03g01251 CCT,ECH 53 151 CCAAT-HAP5 Transcription Factor Family AT1G08970 79.8 2.1e-41 166.0
Bma06g00262 . 39 137 CCAAT-HAP5 Transcription Factor Family AT1G08970 78.8 4.7e-41 164.9
Bma14g01344 . 72 223 CCAAT-HAP5 Transcription Factor Family AT1G54830 71.1 5.6e-52 201.1
Bma08g00818 . 61 191 CCAAT-HAP5 Transcription Factor Family AT1G54830 74.0 6.9e-50 194.1
Bma03g01251 CCT,ECH 53 190 CCAAT-HAP5 Transcription Factor Family AT1G54830 69.3 2.2e-48 189.1
Bma06g00262 . 39 176 CCAAT-HAP5 Transcription Factor Family AT1G54830 67.9 8.4e-48 187.2
Bma03g01251 CCT,ECH 53 237 CCAAT-HAP5 Transcription Factor Family AT5G63470 69.6 5.1e-65 244.6
Bma06g00262 . 39 223 CCAAT-HAP5 Transcription Factor Family AT5G63470 64.9 2.7e-58 222.2
Bma08g00818 . 61 190 CCAAT-HAP5 Transcription Factor Family AT5G63470 70.5 2.8e-47 185.7
Bma14g01344 . 73 226 CCAAT-HAP5 Transcription Factor Family AT5G63470 61.3 5.0e-44 174.9
Bma08g00818 . 21 189 CCAAT-HAP5 Transcription Factor Family AT1G56170 79.4 1.7e-63 239.2
Bma03g01251 CCT,ECH 53 176 CCAAT-HAP5 Transcription Factor Family AT1G56170 71.7 1.2e-48 189.9
Bma14g01344 . 45 190 CCAAT-HAP5 Transcription Factor Family AT1G56170 70.3 4.5e-48 188.0
Bma06g00262 . 39 162 CCAAT-HAP5 Transcription Factor Family AT1G56170 72.4 7.7e-48 187.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005355 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57434 PF00808 CBFD_NFYB_HMF 8.70E-18 CL0012 Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g00262 Bma_Chr06 FPKM 6.753671 4.910054 12.530359 14.432053 22.724573 30.76017 22.838093 19.302952 20.359411 18.462891