Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00263 ATGACCAGTCAATCCGGTTCCTCAAGGAGAAGTTTGCCGTTGATGAATATATCATCACAGGGAAAAAAGAAAAGTTCCGATAATGGAGGTCTTGATACGGCAAATTCTCGGAAGTCCCTTACATCCTCTCGTTCTATGGGACTAACAAGTGAGCGTACAGTTAAACGGCTGCGGCTGTCTAAAGCCCTGACAATACCTGAAAGCACGAGTATATATGAGGCGTGCCGCAGAATGGTTGCTCGTAGAGTTGATGCGTTATTGCTTACTGACTCCAATGCATTGCTATGTGGAATCCTAACTGACAAGGATATAGCAACTAGAGTCATTGCTCGTGAGGTTAACCTTGAGGAAACACCTGTTTCTAAAGTAATGACAAGGAACCCGGTTTTTGTTCTTTCTGACACTCTTGCTGTGGATGCCCTCCACAAGATGGTGCAAGGGAAGTTTAGGCATTTACCTATTGTGGAGAATGGAGAGGTCATTGCCTTGCTTGATATAGCGAAATGTTTATACGACGCAATTGCTCGATTGGAAAGGGCAGCTGAAAAGGGAAAGGCCATTGCTGCAGCTGTAGAAGGTGTTGAAAAAAATTGGGGAACATCTACATCCGGTCCAAACACCTTCATTGAGACGCTTCGAGATATGATATTTAAACCATCTCTCTCCACACTCATCCCAGAGAATTCAAAGATTATAACTGTTGCCCCCACAGAAACTGTTCTATCAACAACAAAGAAGATGCTTGAACTTCGAATAAGCGCTGCAGTTGTAACAGTTGACAATAAGCCGCGGGGAATTTTGACTTCAAAGGATATCTTGATGCGCGTTATTGCTCAAAAACTTCCACCAGAGTCAACTCCTGTAGAAAAGGTCATGACTCCTAATCCAGAATGTGGCACTGTTGATACACCTATAGTTGATGCCTTACATACTATGCATGATGGGAAATTCTTGCACCTTCCAGTGGTAGACAGAGACGGAAATATTGTGGCTGTGATTGATGTGATACATATTACTCATGCTGCTGTTGCCACAGTTGGAAGTGTTGCTGGTATCAACAATGAGGCTTCCGGCACTATGATGAATAAGTTTTGGGATTCTGCCATGTCCTTAACTCCAAATGAGGATGATGAGGATGCACGGAGTGAAGTTTCGTTGAAGTTTAATTCTACTGAGGATACTGATTCCGGAAGGCCTCCTACATCTAGTCTTCCAAACACTTTTTCTTTTAAAATCCAAGATAAAAAAGGAAGAATGCATCGCTTTACATGCGATTCTAGGAGTTTGACAGACTATGAGGATGACGACAATGACAAAGTTGTACTGGCATCAGATAATGATCTAGCAGCAGCTGTGGAGCATGCAAAGTCTGCTGGTTGGAAGGGTTTGAGACTGCACTTAGATTATTCAGGAACCATTGCACTTAGAAAAGGTTCTAGTGCGGGAGATTTGGACTATGCTCGTGCCGATGCTTGGGCCTCTGCATACAGTGCCGTTGCAGCGGGAGCTGCACTAGTCGCTGGCTTAGGAGTATTAGCATACATCAAGAGATCTGGTAGTTGA 1563 43.7 MTSQSGSSRRSLPLMNISSQGKKKSSDNGGLDTANSRKSLTSSRSMGLTSERTVKRLRLSKALTIPESTSIYEACRRMVARRVDALLLTDSNALLCGILTDKDIATRVIAREVNLEETPVSKVMTRNPVFVLSDTLAVDALHKMVQGKFRHLPIVENGEVIALLDIAKCLYDAIARLERAAEKGKAIAAAVEGVEKNWGTSTSGPNTFIETLRDMIFKPSLSTLIPENSKIITVAPTETVLSTTKKMLELRISAAVVTVDNKPRGILTSKDILMRVIAQKLPPESTPVEKVMTPNPECGTVDTPIVDALHTMHDGKFLHLPVVDRDGNIVAVIDVIHITHAAVATVGSVAGINNEASGTMMNKFWDSAMSLTPNEDDEDARSEVSLKFNSTEDTDSGRPPTSSLPNTFSFKIQDKKGRMHRFTCDSRSLTDYEDDDNDKVVLASDNDLAAAVEHAKSAGWKGLRLHLDYSGTIALRKGSSAGDLDYARADAWASAYSAVAAGAALVAGLGVLAYIKRSGS 520
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3632133 3636398 - Bma022895.1 Bma06g00263 83765

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00263 520 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 432 507 - -
Bma06g00263 520 CDD CBS_pair_MUG70_1 59 175 - -
Bma06g00263 520 ProSiteProfiles CBS domain profile. 224 284 IPR000644 -
Bma06g00263 520 SMART cbs_1 230 277 IPR000644 -
Bma06g00263 520 SMART cbs_1 127 171 IPR000644 -
Bma06g00263 520 SMART cbs_1 61 109 IPR000644 -
Bma06g00263 520 SMART cbs_1 295 343 IPR000644 -
Bma06g00263 520 SMART PB1_new 407 470 IPR000270 GO:0005515
Bma06g00263 520 Gene3D - 33 189 IPR046342 -
Bma06g00263 520 CDD CBS_pair_MUG70_2 228 344 - -
Bma06g00263 520 Pfam PB1 domain 420 468 IPR000270 GO:0005515
Bma06g00263 520 MobiDBLite consensus disorder prediction 1 50 - -
Bma06g00263 520 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 23 431 - -
Bma06g00263 520 MobiDBLite consensus disorder prediction 1 51 - -
Bma06g00263 520 PANTHER CBS DOMAIN-CONTAINING PROTEIN CBSCBSPB4-RELATED 23 431 IPR034896 -
Bma06g00263 520 Pfam CBS domain 120 164 IPR000644 -
Bma06g00263 520 Pfam CBS domain 288 341 IPR000644 -
Bma06g00263 520 Pfam CBS domain 60 106 IPR000644 -
Bma06g00263 520 Pfam CBS domain 228 274 IPR000644 -
Bma06g00263 520 SUPERFAMILY CAD & PB1 domains 397 472 - -
Bma06g00263 520 ProSiteProfiles CBS domain profile. 58 117 IPR000644 -
Bma06g00263 520 MobiDBLite consensus disorder prediction 389 408 - -
Bma06g00263 520 ProSiteProfiles CBS domain profile. 292 349 IPR000644 -
Bma06g00263 520 SUPERFAMILY CBS-domain pair 51 168 IPR046342 -
Bma06g00263 520 ProSiteProfiles PB1 domain profile. 381 470 IPR000270 GO:0005515
Bma06g00263 520 ProSiteProfiles CBS domain profile. 124 182 IPR000644 -
Bma06g00263 520 Gene3D - 220 346 IPR046342 -
Bma06g00263 520 PANTHER CBS DOMAIN-CONTAINING PROTEIN CBSCBSPB4-RELATED 432 507 IPR034896 -
Bma06g00263 520 SUPERFAMILY CBS-domain pair 229 342 IPR046342 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00263 - - - egr:104426150 754.207
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00263 Bma-Chr6:3632133 Bma08g00263 Bma-Chr8:3474188 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g93 . Blo16g00274 . . Bpe12g00476 . Bma06g00263 . . . Cma10g00055 Cma11g00028 . Car11g00028 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda14g01355 . Bpe15g00223 . . . Cmo10g00049 . . . . . . . . . . . . . . . . . . . . . . Csa01g00048 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001844 2 3 4 3 3 2 2 2 2 2 1 2 1 2 2 2 2 5 2 2 2 2 2 2 2 1 1 4 3 2 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g00263 Bma_Chr06 FPKM 7.054501 8.085028 8.49017 9.073584 11.559923 12.696882 12.069369 8.068005 7.546584 8.54399