Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00279 ATGACTAGTCGAGTTGTCACCCTTTGGTATCGCCCCCCCGAACTACTCCTCGGGGCTACCTTCTATGGTGCTGGTGTCGACCTTTGGAGTGCCGGCTGCATCCTGGCAGAGCTGCTGGCTGGGAAACCAATAATGCCCGGAAGAACCGAGGTTGAACAACTTCACAAGATATTTAAGTTATGTGGCTCTCCATCCGATGACTATTGGAAGAAGCATAAACTGCCCAATGCGACTCTGTTTAAGCCACAGCAACCGTACAAACGAAGCGTGGCCGAGACTTTCAAGGATTTCCCTTCATCTTCTTTACCTCTTGTCGACGCTCTTCTTTCGGCAGATCCTGACGATCGGGGCAGTGCCACAGATGCATTGAATAGCCAATTCTTTAACTCTGAGCCTCAAGCTTGTGAACCTTCGAGTCTACCAAAGTATCCTCCAAGCAAGGAAATGGACGCGAAGTTGAGAGACGAAGAAGCAAAACGGCAAAGGGGTCTAAACGGGAAAGCTAGTGCTGTCGATGGTGTCCGGAAAGTGAGAGTTCATGATAGAGTTAGTAAGGCCATTCCAGCTCCGGAAGCAAATGCGGAAATTCAAGCAAACTTAGATAGGTGGAGATTCGTGACTCAATCGAACGCAAAGAGCAAGAGCGAGAAATTCCCACCACCCCACAAGGATGGAGAGGTTGGATACCCTCGCGAAGCGACGCACAAAGGGCCCGTGTCGTTTGGTGGGGCCGAGTCGAACACCTCATTTAGCTCTTCCATTTTTAATTCTATTCCGGGATCTGTTAAAAGTGCTGGCTCTTCAGGGAAAACTTCCCGAAAGACGAAAACAAATAAGGATCCTCTAATGGCTCCGTCTCGAAAATTCATTCGTGCATTTAAGCCATCGATAGGGCTGCCGATGGATTTGTTATTTAAGGCTAAGTAA 927 48.65 MTSRVVTLWYRPPELLLGATFYGAGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPSDDYWKKHKLPNATLFKPQQPYKRSVAETFKDFPSSSLPLVDALLSADPDDRGSATDALNSQFFNSEPQACEPSSLPKYPPSKEMDAKLRDEEAKRQRGLNGKASAVDGVRKVRVHDRVSKAIPAPEANAEIQANLDRWRFVTQSNAKSKSEKFPPPHKDGEVGYPREATHKGPVSFGGAESNTSFSSSIFNSIPGSVKSAGSSGKTSRKTKTNKDPLMAPSRKFIRAFKPSIGLPMDLLFKAK 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3892970 3894957 - Bma022914.1 Bma06g00279 83781

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00279 308 MobiDBLite consensus disorder prediction 131 150 - -
Bma06g00279 308 MobiDBLite consensus disorder prediction 260 283 - -
Bma06g00279 308 Pfam Protein kinase domain 1 128 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma06g00279 308 ProSiteProfiles Protein kinase domain profile. 1 128 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma06g00279 308 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 1 265 - -
Bma06g00279 308 PANTHER CELL DIVISION PROTEIN KINASE 1 265 - -
Bma06g00279 308 SUPERFAMILY Protein kinase-like (PK-like) 1 132 IPR011009 -
Bma06g00279 308 Gene3D Transferase(Phosphotransferase) domain 1 1 167 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00279 K08819 CDK12_13; cyclin-dependent kinase 12/13 [EC:2.7.11.22 2.7.11.23] - zju:107404513 491.886
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00279 Bma-Chr6:3892970 Bma05g00317 Bma-Chr5:9997295 4.54E-103 dispersed
Bma06g00279 Bma-Chr6:3892970 Bma02g00876 Bma-Chr2:46976270 1.81E-85 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma03g00379 . 1 291 Core Cell Cycle Gene Families AT3G48750 84.9 4.3e-148 520.8
Bma08g01208 . 1 291 Core Cell Cycle Gene Families AT3G48750 85.6 7.4e-148 520.0
Bma15g00419 . 1 300 Core Cell Cycle Gene Families AT3G48750 58.1 1.7e-96 349.4
Bma01g02422 . 11 307 Core Cell Cycle Gene Families AT3G48750 52.0 4.4e-92 334.7
Bma12g00321 . 1 275 Core Cell Cycle Gene Families AT3G48750 56.9 4.7e-86 314.7
Bma15g00419 . 1 305 Core Cell Cycle Gene Families AT3G54180 80.6 3.6e-145 511.1
Bma12g00321 . 1 275 Core Cell Cycle Gene Families AT3G54180 82.4 6.4e-134 473.8
Bma01g02422 . 11 310 Core Cell Cycle Gene Families AT3G54180 65.5 1.2e-116 416.4
Bma03g00379 . 1 287 Core Cell Cycle Gene Families AT3G54180 54.3 2.1e-89 325.9
Bma08g01208 . 1 287 Core Cell Cycle Gene Families AT3G54180 54.3 2.1e-89 325.9
Bma15g00419 . 1 305 Core Cell Cycle Gene Families AT2G38620 67.5 2.4e-115 411.8
Bma12g00321 . 1 275 Core Cell Cycle Gene Families AT2G38620 68.4 3.3e-104 374.8
Bma01g02422 . 11 310 Core Cell Cycle Gene Families AT2G38620 56.7 2.6e-93 338.6
Bma01g02422 . 1 307 Core Cell Cycle Gene Families AT1G76540 83.4 2.5e-154 541.6
Bma15g00419 . 1 300 Core Cell Cycle Gene Families AT1G76540 65.0 3.0e-115 411.8
Bma12g00321 . 1 275 Core Cell Cycle Gene Families AT1G76540 64.7 2.8e-105 378.6
Bma03g00379 . 1 287 Core Cell Cycle Gene Families AT1G76540 52.2 5.2e-91 331.3
Bma08g01208 . 1 287 Core Cell Cycle Gene Families AT1G76540 52.5 6.8e-91 330.9
Bma01g02422 . 1 312 Core Cell Cycle Gene Families AT1G20930 82.5 1.0e-155 546.2
Bma15g00419 . 1 305 Core Cell Cycle Gene Families AT1G20930 65.4 5.0e-118 421.0
Bma12g00321 . 1 275 Core Cell Cycle Gene Families AT1G20930 65.8 8.0e-108 387.1
Bma08g01208 . 1 287 Core Cell Cycle Gene Families AT1G20930 53.9 8.6e-94 340.5
Bma03g00379 . 1 287 Core Cell Cycle Gene Families AT1G20930 53.2 2.5e-93 339.0
Bma11g00324 . 1 532 Core Cell Cycle Gene Families AT5G10270 72.2 1.5e-204 709.1
Bma04g00318 . 176 492 Core Cell Cycle Gene Families AT5G10270 53.9 6.4e-99 358.2
Bma15g00068 . 147 473 Core Cell Cycle Gene Families AT5G10270 51.3 1.9e-95 346.7
Bma02g01380 BCT 43 359 Core Cell Cycle Gene Families AT5G10270 52.9 3.3e-95 345.9
Bma14g00238 . 48 355 Core Cell Cycle Gene Families AT5G10270 54.6 5.6e-95 345.1
Bma12g00731 . 138 454 Core Cell Cycle Gene Families AT5G10270 51.1 2.8e-94 342.8
Bma05g00317 . 115 430 Core Cell Cycle Gene Families AT5G10270 52.3 3.6e-94 342.4
Bma06g00165 . 116 433 Core Cell Cycle Gene Families AT5G10270 51.5 2.0e-92 336.7
Bma03g00839 . 116 412 Core Cell Cycle Gene Families AT5G10270 53.0 2.3e-88 323.2
Bma06g00279 . 1 162 Core Cell Cycle Gene Families AT5G10270 50.6 2.5e-42 170.2
Bma11g00324 . 65 531 Core Cell Cycle Gene Families AT5G64960 72.6 1.0e-172 603.2
Bma14g00238 . 93 355 Core Cell Cycle Gene Families AT5G64960 55.0 5.8e-83 305.1
Bma04g00318 . 230 492 Core Cell Cycle Gene Families AT5G64960 54.3 9.9e-83 304.3
Bma02g01380 BCT 97 359 Core Cell Cycle Gene Families AT5G64960 53.2 1.6e-80 297.0
Bma12g00731 . 192 456 Core Cell Cycle Gene Families AT5G64960 51.1 7.9e-80 294.7
Bma15g00068 . 201 463 Core Cell Cycle Gene Families AT5G64960 52.9 1.0e-79 294.3
Bma05g00317 . 166 430 Core Cell Cycle Gene Families AT5G64960 51.1 1.8e-76 283.5
Bma12g00732 BCT 165 427 Core Cell Cycle Gene Families AT5G64960 50.7 4.0e-76 282.3
Bma06g00165 . 170 435 Core Cell Cycle Gene Families AT5G64960 50.5 4.0e-76 282.3
Bma03g00839 . 170 412 Core Cell Cycle Gene Families AT5G64960 52.3 1.3e-71 267.3
Bma06g00279 . 1 152 Core Cell Cycle Gene Families AT5G64960 51.0 5.5e-41 165.6
Bma15g00761 . 35 488 Core Cell Cycle Gene Families AT5G63610 74.6 9.2e-193 669.8
Bma02g00209 CCT 4 475 Core Cell Cycle Gene Families AT1G44110 59.9 7.2e-142 500.7
Bma01g00805 BCT 4 492 Core Cell Cycle Gene Families AT1G44110 54.2 1.6e-133 473.0
Bma02g00210 BCT 2 257 Core Cell Cycle Gene Families AT1G44110 61.3 2.4e-89 326.2
Bma01g02152 . 211 474 Core Cell Cycle Gene Families AT1G44110 53.8 1.1e-81 300.8
Bma04g00147 BCT,CCT,ECH 28 289 Core Cell Cycle Gene Families AT1G44110 50.8 2.3e-71 266.5
Bma01g02257 BCT,CCT,ECH 69 243 Core Cell Cycle Gene Families AT1G44110 51.4 2.1e-48 190.3
Bma01g00805 BCT 223 490 Core Cell Cycle Gene Families AT1G77390 61.6 4.7e-98 355.1
Bma02g00210 BCT 1 276 Core Cell Cycle Gene Families AT1G77390 56.5 1.5e-83 307.0
Bma01g02152 . 211 472 Core Cell Cycle Gene Families AT1G77390 53.1 1.6e-74 276.9
Bma01g02257 BCT,CCT,ECH 90 243 Core Cell Cycle Gene Families AT1G77390 51.3 6.7e-44 175.3
Bma01g02152 . 7 474 Core Cell Cycle Gene Families AT5G25380 53.0 1.6e-114 409.8
Bma02g00209 CCT 206 465 Core Cell Cycle Gene Families AT5G25380 51.6 9.6e-75 277.7
Bma01g00805 BCT 223 482 Core Cell Cycle Gene Families AT5G25380 50.9 6.9e-73 271.6
Bma04g00147 BCT,CCT,ECH 34 286 Core Cell Cycle Gene Families AT5G25380 51.4 5.8e-72 268.5
Bma02g00210 BCT 2 258 Core Cell Cycle Gene Families AT5G25380 52.5 3.5e-69 259.2
Bma01g02257 BCT,CCT,ECH 90 243 Core Cell Cycle Gene Families AT5G25380 55.2 2.3e-44 176.8
Bma01g00805 BCT 225 430 Core Cell Cycle Gene Families AT5G11300 55.7 2.3e-62 236.5
Bma02g00209 CCT 208 413 Core Cell Cycle Gene Families AT5G11300 53.9 1.5e-61 233.8
Bma02g00210 BCT 2 209 Core Cell Cycle Gene Families AT5G11300 55.3 7.4e-61 231.5
Bma04g00147 BCT,CCT,ECH 34 224 Core Cell Cycle Gene Families AT5G11300 56.5 1.9e-56 216.9
Bma01g02257 BCT,CCT,ECH 90 243 Core Cell Cycle Gene Families AT5G11300 57.1 2.5e-45 179.9
Bma01g02152 . 212 474 Core Cell Cycle Gene Families AT1G15570 62.4 7.2e-94 341.3
Bma02g00209 CCT 206 472 Core Cell Cycle Gene Families AT1G15570 52.1 1.7e-74 276.9
Bma04g00147 BCT,CCT,ECH 33 286 Core Cell Cycle Gene Families AT1G15570 54.3 2.2e-74 276.6
Bma01g00805 BCT 223 489 Core Cell Cycle Gene Families AT1G15570 51.4 2.8e-74 276.2
Bma02g00209 CCT 206 460 Core Cell Cycle Gene Families AT1G80370 53.7 5.0e-74 275.4
Bma01g00805 BCT 223 477 Core Cell Cycle Gene Families AT1G80370 53.0 7.2e-73 271.6
Bma04g00147 BCT,CCT,ECH 33 287 Core Cell Cycle Gene Families AT1G80370 52.5 4.8e-69 258.8
Bma01g02257 BCT,CCT,ECH 90 243 Core Cell Cycle Gene Families AT1G80370 55.2 1.4e-44 177.6
Bma04g00147 BCT,CCT,ECH 33 291 Core Cell Cycle Gene Families AT5G43080 64.5 5.6e-94 341.3
Bma01g00805 BCT 226 492 Core Cell Cycle Gene Families AT5G43080 50.4 3.1e-76 282.3
Bma01g02152 . 213 474 Core Cell Cycle Gene Families AT5G43080 50.8 1.4e-73 273.5
Bma01g02257 BCT,CCT,ECH 3 243 Core Cell Cycle Gene Families AT5G43080 57.1 1.6e-69 260.0
Bma04g00147 BCT,CCT,ECH 35 290 Core Cell Cycle Gene Families AT1G47210 61.7 1.2e-91 333.6
Bma01g02152 . 213 472 Core Cell Cycle Gene Families AT1G47210 50.8 9.9e-73 270.8
Bma01g02257 BCT,CCT,ECH 3 243 Core Cell Cycle Gene Families AT1G47210 55.7 4.6e-70 261.9
Bma04g00147 BCT,CCT,ECH 31 290 Core Cell Cycle Gene Families AT1G47220 58.5 1.9e-83 306.2
Bma01g02257 BCT,CCT,ECH 90 243 Core Cell Cycle Gene Families AT1G47220 64.3 2.0e-53 206.5
Bma04g00147 BCT,CCT,ECH 31 290 Core Cell Cycle Gene Families AT1G47230 60.5 2.6e-89 325.9
Bma01g02257 BCT,CCT,ECH 3 243 Core Cell Cycle Gene Families AT1G47230 57.9 9.5e-68 254.2
Bma05g00047 CCT,ECH 1 193 Core Cell Cycle Gene Families AT1G47230 52.5 2.5e-44 176.4
Bma01g02702 CCT 2 428 Core Cell Cycle Gene Families AT4G37490 50.1 8.9e-102 367.5
Bma05g01330 . 2 276 Core Cell Cycle Gene Families AT4G37490 62.1 1.1e-88 323.9
Bma11g00315 . 1 249 Core Cell Cycle Gene Families AT4G37490 59.1 4.0e-78 288.9
Bma07g00293 . 1 249 Core Cell Cycle Gene Families AT4G37490 56.7 2.5e-72 269.6
Bma09g00495 . 4 245 Core Cell Cycle Gene Families AT4G37490 56.7 7.6e-69 258.1
Bma05g01330 . 1 167 Core Cell Cycle Gene Families AT5G06150 65.9 2.4e-54 209.5
Bma01g00703 . 81 260 Core Cell Cycle Gene Families AT5G06150 52.8 2.4e-49 193.0
Bma11g00315 . 1 145 Core Cell Cycle Gene Families AT5G06150 66.2 2.9e-47 186.0
Bma06g00078 . 47 219 Core Cell Cycle Gene Families AT5G06150 53.8 1.3e-44 177.2
Bma07g00293 . 1 143 Core Cell Cycle Gene Families AT5G06150 64.3 2.5e-43 172.9
Bma09g00495 . 4 139 Core Cell Cycle Gene Families AT5G06150 62.5 5.5e-38 155.2
Bma05g01330 . 1 234 Core Cell Cycle Gene Families AT3G11520 62.8 3.6e-78 288.9
Bma11g00315 . 1 206 Core Cell Cycle Gene Families AT3G11520 64.6 3.6e-70 262.3
Bma07g00293 . 1 207 Core Cell Cycle Gene Families AT3G11520 62.3 4.2e-66 248.8
Bma01g00703 . 82 312 Core Cell Cycle Gene Families AT3G11520 51.1 5.1e-64 241.9
Bma09g00495 . 5 203 Core Cell Cycle Gene Families AT3G11520 62.3 1.3e-62 237.3
Bma01g02702 CCT 132 420 Core Cell Cycle Gene Families AT2G26760 58.5 3.6e-94 342.0
Bma05g01330 . 4 270 Core Cell Cycle Gene Families AT2G26760 57.3 1.8e-85 313.2
Bma11g00315 . 1 259 Core Cell Cycle Gene Families AT2G26760 59.1 5.4e-82 301.6
Bma07g00293 . 4 243 Core Cell Cycle Gene Families AT2G26760 61.7 1.2e-81 300.4
Bma09g00495 . 4 239 Core Cell Cycle Gene Families AT2G26760 60.2 4.5e-76 282.0
Bma01g00703 . 19 355 Core Cell Cycle Gene Families AT2G17620 55.0 4.4e-109 391.7
Bma06g00078 . 3 317 Core Cell Cycle Gene Families AT2G17620 64.2 1.5e-104 376.7
Bma01g02408 . 12 302 Core Cell Cycle Gene Families AT2G17620 60.6 5.2e-94 341.7
Bma11g00315 . 1 253 Core Cell Cycle Gene Families AT2G17620 50.8 1.2e-58 224.2
Bma06g00078 . 3 278 Core Cell Cycle Gene Families AT4G35620 64.2 4.8e-91 331.6
Bma01g00703 . 19 312 Core Cell Cycle Gene Families AT4G35620 55.1 6.3e-91 331.3
Bma01g02408 . 17 263 Core Cell Cycle Gene Families AT4G35620 62.4 1.6e-78 290.0
Bma11g00315 . 1 206 Core Cell Cycle Gene Families AT4G35620 53.6 4.6e-49 192.2
Bma07g00293 . 1 207 Core Cell Cycle Gene Families AT4G35620 51.4 3.6e-46 182.6
Bma09g00495 . 11 203 Core Cell Cycle Gene Families AT4G35620 51.8 3.7e-43 172.6
Bma01g00703 . 5 355 Core Cell Cycle Gene Families AT1G20610 58.8 1.2e-122 436.8
Bma01g02408 . 1 302 Core Cell Cycle Gene Families AT1G20610 70.2 1.4e-115 413.3
Bma06g00078 . 23 317 Core Cell Cycle Gene Families AT1G20610 63.8 7.3e-104 374.4
Bma01g00703 . 4 252 Core Cell Cycle Gene Families AT1G76310 59.2 1.5e-83 306.6
Bma01g02408 . 1 195 Core Cell Cycle Gene Families AT1G76310 71.8 4.3e-75 278.5
Bma06g00078 . 23 219 Core Cell Cycle Gene Families AT1G76310 65.2 6.0e-69 258.1
Bma01g02702 CCT 159 319 Core Cell Cycle Gene Families AT1G76310 52.7 9.1e-41 164.5
Bma05g01330 . 5 169 Core Cell Cycle Gene Families AT1G76310 51.5 2.9e-39 159.5
Bma03g00492 . 74 366 Core Cell Cycle Gene Families AT1G16330 58.8 1.7e-96 350.5
Bma14g01747 . 1 328 Core Cell Cycle Gene Families AT1G70210 57.6 5.8e-96 347.8
Bma01g00063 BCT,CCT 1 313 Core Cell Cycle Gene Families AT1G70210 59.7 1.9e-91 332.8
Bma06g00632 BCT,CCT 1 286 Core Cell Cycle Gene Families AT1G70210 59.9 1.6e-85 313.2
Bma03g01358 . 1 323 Core Cell Cycle Gene Families AT4G34160 50.6 1.7e-80 296.6
Bma03g01357 CCT,ECH 1 331 Core Cell Cycle Gene Families AT4G34160 50.3 2.9e-80 295.8
Bma05g00507 CCT 76 322 Core Cell Cycle Gene Families AT4G34160 51.2 5.7e-60 228.4
Bma05g00508 CCT,ECH 76 319 Core Cell Cycle Gene Families AT4G34160 51.0 3.7e-59 225.7
Bma13g00840 . 1 197 Core Cell Cycle Gene Families AT4G34160 51.8 2.0e-52 203.4
Bma13g00840 . 1 187 Core Cell Cycle Gene Families AT5G67260 52.9 1.5e-50 197.2
Bma04g00152 CCT,ECH 59 228 Core Cell Cycle Gene Families AT5G67260 51.5 4.2e-45 179.1
Bma13g00840 . 4 187 Core Cell Cycle Gene Families AT3G50070 53.8 1.5e-49 193.7
Bma02g00120 CCT 61 265 Core Cell Cycle Gene Families AT5G65420 53.6 3.8e-58 221.9
Bma01g02590 CCT 49 224 Core Cell Cycle Gene Families AT5G10440 53.7 3.0e-48 188.7
Bma03g00713 CCT 471 681 Core Cell Cycle Gene Families AT4G03270 50.5 3.3e-50 195.7
Bma07g00173 CCT 1 86 Core Cell Cycle Gene Families AT2G27960 90.7 2.5e-43 171.0
Bma07g00173 CCT 1 83 Core Cell Cycle Gene Families AT2G27970 85.5 2.5e-40 161.0
Bma08g00878 . 24 1024 Core Cell Cycle Gene Families AT3G12280 70.5 0.0e+00 1331.6
Bma08g00875 . 21 1021 Core Cell Cycle Gene Families AT3G12280 69.5 0.0e+00 1314.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008225 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 0 0 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66529 PF00069 Pkinase 4.50E-18 CL0016 Bma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g00279 Bma_Chr06 FPKM 24.524845 31.128519 9.305623 9.944164 11.9273 9.481708 8.091797 2.570922 1.610597 2.189613