Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00283 ATGCTGTCTCGAGTGAACGGAGTGGTTTGGATGGAAGGCGGAGAAGATGAAGACTCTGCTTCGTGGGTTAGAAACAAGGGTGTCTCCGGCGGCGGCGATGGCCAGCTCAACGGCATCCACTGCGGGGATTTGGAGAACAAGGAGGAGATGAATTCTCTCTCCACCTTCAAATCTATGCTTGATGTGGAAGATGAATGGTACGTTTCTTGTAATAATCTTCAACCTCGGGGAGAAATTCGAGACATTCCGTTTTCGCAATCCCTTGCTGATCCAGATAACCTTCTGCTCCATCCAGTGGATTCTTCGTCTTCCTGCTCTCCTTCTTCTTCGATGTTCAACAATCTCGACCCTTCTCAGGTACATTATCTTTTGCCGCCCAAACCTAGTTTAGCTTCTCTCTTCAACGTAGTTTCTGCCACTCCTCTAGACCATGGATTTGATTTAGCTCCTGAGGTTGAGTTTCTCGAAACCCATACTTCGAATGCTGGTAATTTTCTCAACAGAGGAGCTGGTCTTCTAACTGGGTTTCCTGAAATCGGCTCGAACAACCAAATGGTTGCCCACAATTTGTATCCTGATCCTCAATTCACGGCCACCCGAATGCCCCAAATGCCGGAAAATTCATCTGCTTTCGCCGGATTTCGGAGTTTTGAAGAGAATTCTGGCAATGATGTGTTTCTAAGTAGGTCGAAATTACTGAGGCCCCTTGAATCATTCCCCTCAGCTGGGGCGCAGCCAACTCTTTTCCAGAAAAGGGTGGCTCTGAGAAAAAGTCTGGCCGGCGGCGCTCGTGGTTCGAACGAGATCGAGGACAATAACGACGATATCAGAAAATTGGTCGAACTGAGCGATAGGAAGAGGAAATTGGGCAATGGAGACGACTTCGACAACGGAAGCATTGATGGGTCTGGCTTGAATTATGATTCAGACGAGTTTACAGAGTACAAGGCCGAGGAGAATGCTAGAAATGGTGGGAACAGCTCAAATGCCAACAGTACTGTAACAGGAGGTGACCAAAAAGGGAAGAAGAAGGGTCTTCCGGCCAAGAATTTGATGGCTGAACGGCGACGGAGGAAGAAGCTCAACGACAGGCTCTACATGCTGAGATCTGTAGTTCCAAAAATAAGCAAAATGGATAGGGCCTCAATCCTTGGAGATGCAATTGAGTACTTGAAGGAACTCTTGCAAAGGATCAATGATTTGCACAACGAATTGGAGTCAACCCCTCCCGGCTCTGCCATGACGCCCACTACGAGCTTCCATCCTCTAACTCCGACTCCACCAACTTTGCCGGGACGGATTAAGGAGGAAGTCTGCCCCAGCGCATTGTCGAGCCCAAACGGCCAACCTGCCAGGGTCGAAGTTAGGGTGAGGGAAGGAAGAGCTGTGAACATTCACATGTTTTGCGGCCGTAGTCCCGGTCTGCTACTCTCGACTATGAGAGTATTGGATAATCTCGGACTAGACATCCAACAAGCTGTCATCAGCTGCTTCAATGGTTTTGCCATGGACATCTTTCGAGCCGAGAGCAAGGAGGGGCAGGAGATCCATCCGGAGCAGATAAAAGCGATACTTCTGGAGTCGGCCGGGTTCCATGGAATGATTTAG 1608 49.07 MLSRVNGVVWMEGGEDEDSASWVRNKGVSGGGDGQLNGIHCGDLENKEEMNSLSTFKSMLDVEDEWYVSCNNLQPRGEIRDIPFSQSLADPDNLLLHPVDSSSSCSPSSSMFNNLDPSQVHYLLPPKPSLASLFNVVSATPLDHGFDLAPEVEFLETHTSNAGNFLNRGAGLLTGFPEIGSNNQMVAHNLYPDPQFTATRMPQMPENSSAFAGFRSFEENSGNDVFLSRSKLLRPLESFPSAGAQPTLFQKRVALRKSLAGGARGSNEIEDNNDDIRKLVELSDRKRKLGNGDDFDNGSIDGSGLNYDSDEFTEYKAEENARNGGNSSNANSTVTGGDQKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNELESTPPGSAMTPTTSFHPLTPTPPTLPGRIKEEVCPSALSSPNGQPARVEVRVREGRAVNIHMFCGRSPGLLLSTMRVLDNLGLDIQQAVISCFNGFAMDIFRAESKEGQEIHPEQIKAILLESAGFHGMI 535
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4002723 4004973 + Bma022918.1 Bma06g00283 83785

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00283 535 CDD bHLH_AtAMS_like 348 412 - -
Bma06g00283 535 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 345 394 IPR011598 GO:0046983
Bma06g00283 535 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 348 415 IPR036638 GO:0046983
Bma06g00283 535 MobiDBLite consensus disorder prediction 320 338 - -
Bma06g00283 535 MobiDBLite consensus disorder prediction 287 306 - -
Bma06g00283 535 Pfam Helix-loop-helix DNA-binding domain 352 394 IPR011598 GO:0046983
Bma06g00283 535 Coils Coil 384 408 - -
Bma06g00283 535 PANTHER BHLH TRANSCRIPTIONAL FACTOR 100 535 - -
Bma06g00283 535 SMART finulus 351 400 IPR011598 GO:0046983
Bma06g00283 535 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 100 535 - -
Bma06g00283 535 Gene3D - 339 408 IPR036638 GO:0046983
Bma06g00283 535 CDD ACT_UUR-ACR-like 465 524 - -
Bma06g00283 535 MobiDBLite consensus disorder prediction 318 350 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00283 - - - vvi:100245749 676.396
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g01154 Bma-Chr4:29650135 Bma06g00283 Bma-Chr6:4002723 1.63E-11 dispersed
Bma06g00283 Bma-Chr6:4002723 Bma14g01421 Bma-Chr14:26921993 2.40E-128 dispersed
Bma06g00283 Bma-Chr6:4002723 Bma02g00102 Bma-Chr2:926035 2.31E-25 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g28 . Blo16g00289 . . . . Bma06g00283 . . Cmo18g00238 . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00527 Csa01g00990 Chy12g01144 Cme12g01562 . . Bda11g01575 . . . . . Sed08g2407 . . . Cma18g00292 Car13g00673 Car18g00249 Cpe09g00942 . Bhi08g01538 Tan05g3011 Cmetu06g0036 Lac10g0613 Hepe07g2082 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011005 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 1 31
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57436 PF00010 HLH 2.00E-09 No_clan Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g00283 Bma_Chr06 FPKM 3.053346 3.402618 4.755605 4.714635 8.685773 7.512782 9.315156 6.253657 5.603875 5.938295