Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00284 ATGCCAGTGTCTAGGCCAAAAAGGCCGCGATCGAACATGGTTCCCACGTCCTCCGAGTCCTCGGTCCTTACTAGGGAAGGTTCATCTAGAGTAGACCCTCCTCCAGCCAGTGGGTTTTCAAGGGTCTTGCAAGGTCAAGATTTTTCGATCTTGAGAGACAACATTATCGAAAGTAATGAATGTGAAGTTGTGGAGAAGTCTGTTGTTTGGCCACCTTCACTAGATGATGAGAAGGTTGATATGATATCTGCTTCAAGGAGATTTATGACAGAGAACTGGGCTCCTGGAAGCGGTGAACCAACCTACACAGATTTGTTATCGGGTTTTGGGACTAATGGAGAATATTCCCATGGGGTTCTTTCTACATTTGCTGATCCAATGGTTCGAACTACCCACTCTGTGAGGAAACATGTACTTGGTCAGGATGGTAAGGCTACTGTTCTTGGCAACCCATGGCCCGGAAGATCTTCTGGTCTCTCACTCACATTAGCAGACTCTAATCAGAAGGGTTCTGTTTGTGCTGGTGATATCTCATATCAAGCACGGGTGAACAACAGATATGGCAACCTTCTCAATAATAATACCATGCTTGAGGGCCAGAAATTTGAAAATTCCCCTAGCTGTTGGCTGATGCCTCCGCCATTGCCATCTAATCTCGATAATTCAGTTATTTCAAGAGAGAAAAGGGGAAAAGGCCCAGTGGCACAGAAGCTGGAGGCTGTGAAACCCCAGGATGGGAATTGCAAGATCTTTGGTATTTCCCTCATCGGGAACCCTGTGACACCAGGTCCTGCAGTATCAAACAGAGAAATTATTAACGAGCCAGTTATTCAGATGCGCCAGATTCTCCCAGATTATACCTGTGAACAAAAGTCTGAAGAGCCGAAATGCCCGGCATCTGCTGGTAATCGGCTTGCTGCTAATGAACCTGACAAACAACCACAAACCAGTGAAATACATGCAAGGGATGTTCAAAGTAAAGGGCAAAGTGGGTCATCTAGGAGTTGTACTAAGGTCCATAAGCAGGGTATTGCACTTGGAAGGTCAGTGGATCTCAGTAAGTTCAACAACTATGATGAACTTATTGCTGATTTGGATCAGTTGTTTGAATTTGGGGGTGAGTTAGCTGCTCCGACAAAGAATTGGCTTATTGTTTACACCGATGATGAAGGTGACATGATGCTTGTTGGAGATGATCCGTGGCAGGAATTTTGTGGCATGGTTCGCAAAATTTTTATATATACTAGAGAGGAGGTTCAAAGGATGAATCCAGGGTCCTTAAGTATGAAAGCAGAGGAGTCCACATCAGTTGAAGTTGAAGGTTCAAATGAGGCTAAATGCCAGCCTTTATCTTCAGCAGAAATCTCGTAG 1371 44.86 MPVSRPKRPRSNMVPTSSESSVLTREGSSRVDPPPASGFSRVLQGQDFSILRDNIIESNECEVVEKSVVWPPSLDDEKVDMISASRRFMTENWAPGSGEPTYTDLLSGFGTNGEYSHGVLSTFADPMVRTTHSVRKHVLGQDGKATVLGNPWPGRSSGLSLTLADSNQKGSVCAGDISYQARVNNRYGNLLNNNTMLEGQKFENSPSCWLMPPPLPSNLDNSVISREKRGKGPVAQKLEAVKPQDGNCKIFGISLIGNPVTPGPAVSNREIINEPVIQMRQILPDYTCEQKSEEPKCPASAGNRLAANEPDKQPQTSEIHARDVQSKGQSGSSRSCTKVHKQGIALGRSVDLSKFNNYDELIADLDQLFEFGGELAAPTKNWLIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTREEVQRMNPGSLSMKAEESTSVEVEGSNEAKCQPLSSAEIS 456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4006564 4008203 - Bma022919.1 Bma06g00284 83786

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00284 456 MobiDBLite consensus disorder prediction 427 456 - -
Bma06g00284 456 MobiDBLite consensus disorder prediction 289 338 - -
Bma06g00284 456 Gene3D - 330 423 - -
Bma06g00284 456 SUPERFAMILY CAD & PB1 domains 333 411 - -
Bma06g00284 456 MobiDBLite consensus disorder prediction 10 27 - -
Bma06g00284 456 ProSiteProfiles PB1 domain profile. 334 418 IPR000270 GO:0005515
Bma06g00284 456 PANTHER AUXIN RESPONSE FACTOR 2A 2 440 - -
Bma06g00284 456 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 2 440 IPR044835 GO:0003677|GO:0006355|GO:0009725
Bma06g00284 456 MobiDBLite consensus disorder prediction 425 456 - -
Bma06g00284 456 MobiDBLite consensus disorder prediction 1 39 - -
Bma06g00284 456 Pfam AUX/IAA family 313 419 IPR033389 -
Bma06g00284 456 MobiDBLite consensus disorder prediction 309 338 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00284 - - - cpap:110824909 511.531
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00284 Bma-Chr6:4006564 Bma15g00074 Bma-Chr15:857350 7.05E-41 dispersed
Bma06g00284 Bma-Chr6:4006564 Bma07g00661 Bma-Chr7:11296912 5.43E-19 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g27 . Blo16g00290 . . . Bpe13g00184 Bma06g00284 . . . Cma10g00017 . Car10g00012 . . . . Bhi02g00618 . . . Hepe09g0011 . . . . . . . . . . . Cone13ag0257 Cone19ag0242 . . . . . . Bda11g01574 . . . . . . Cmo10g00015 . . . . . . Cpe18g00939 . . . . . . . . . . . . . . Lsi06g01682 Csa01g00009 Chy02g02705 Cme02g02113
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008223 1 1 1 1 1 0 2 1 1 1 0 0 2 1 1 2 0 2 2 0 1 1 1 1 1 1 1 3 1 3 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57437 PF02309 AUX_IAA 1.10E-11 CL0072 Bma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g00284 Bma_Chr06 FPKM 1.395238 1.125952 1.595329 3.463524 0.34919 1.021022 0.0 3.384575 5.832166 5.567435