Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00299 ATGAACAGACCTTGCAGCTCTGATTCCTTAGCTGCTCTCATGTCTATCTGCCCAGCTACAGAGGATCACAGTCCAAGAAACAACAGCGTTTTCGAAAGGGGATTTCAATCCATGTTTGATGAAGACGACTGTACAGAAGAATCTGGACATGTTTCTGAGAAGAAGAGGCGTTTGGGGTTGGACCAAGTTAAGGCGCTGGAGAAAAACTTCGAGCTGGACAACAAGCTCGAACCGGAGAGAAAAGTGAAGTTAGCTCGAGAGCTTGGGTTGCAACCCAGGCAAGTCGCTGTTTGGTTCCAAAATCGACGAGCCAGATGGAAAACTAAGCAATTAGAGAGAGATTATGGCGCTCTTAAATCTAGTTATGATGCTCTCAAGCTCAAATTCGATACTCTTCGACGCGACAACGAAGATCTTCTCGAGGAGATTAAGGAAGCGAAAGCTAAGCTGTTTGAAGAAGAGAATACAGAAAGCAATCTCTCAGTGAAAGAAGAAATAACAATGGCGGATTCCACTCGAATCGACCAAACAAACCCACCCTCTGATAACCCTTTTCCTGTCGAATCCGAATCCCAAGACTTCCACTGCCAGAGCTTCATCAACAACAATGGCGGAGAATCAGGGTACGAAATGTCATTCCTCGCAGGCCATTCGAAAGATGGGTCGTCAGACGATAGCGATTCGAGCGCAATACTGAACAGTCCAAAGACGGCCATTTCCTCTCCGCCGGCTATCTGTAATAACCAGAAACTGGCTTGGTCTTCTTCCGCGAAAACGAAGGGCTCGTCGTCTTCTGGTTCGTCTCTGAACTGTTTTCAATTTCAGAAATCCTACCAGCCGCAACTGGATGTGAAAATCGAGGAGCAAACTTTGTTTGGCGGGGAGGAGGGGTGCAGTTTCTTTTCTGCCGATCAAGCTCCGACTCTTCAATGGTGTTACCAGGATCAATGGGATTAA 957 46.81 MNRPCSSDSLAALMSICPATEDHSPRNNSVFERGFQSMFDEDDCTEESGHVSEKKRRLGLDQVKALEKNFELDNKLEPERKVKLARELGLQPRQVAVWFQNRRARWKTKQLERDYGALKSSYDALKLKFDTLRRDNEDLLEEIKEAKAKLFEEENTESNLSVKEEITMADSTRIDQTNPPSDNPFPVESESQDFHCQSFINNNGGESGYEMSFLAGHSKDGSSDDSDSSAILNSPKTAISSPPAICNNQKLAWSSSAKTKGSSSSGSSLNCFQFQKSYQPQLDVKIEEQTLFGGEEGCSFFSADQAPTLQWCYQDQWD 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4444601 4445785 - Bma022941.1 Bma06g00299 83801

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00299 318 MobiDBLite consensus disorder prediction 170 192 - -
Bma06g00299 318 PRINTS Lambda-repressor HTH signature 80 89 IPR000047 GO:0003677
Bma06g00299 318 PRINTS Lambda-repressor HTH signature 89 105 IPR000047 GO:0003677
Bma06g00299 318 ProSitePatterns 'Homeobox' domain signature. 84 107 IPR017970 GO:0000981|GO:0006355
Bma06g00299 318 MobiDBLite consensus disorder prediction 210 236 - -
Bma06g00299 318 SUPERFAMILY Homeodomain-like 43 111 IPR009057 -
Bma06g00299 318 Pfam Homeobox associated leucine zipper 109 150 IPR003106 GO:0006355|GO:0043565
Bma06g00299 318 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 3 308 IPR045224 GO:0003700
Bma06g00299 318 Coils Coil 122 156 - -
Bma06g00299 318 Gene3D - 49 116 - -
Bma06g00299 318 ProSiteProfiles 'Homeobox' domain profile. 49 109 IPR001356 GO:0003677
Bma06g00299 318 SMART HOX_1 52 113 IPR001356 GO:0003677
Bma06g00299 318 Pfam Homeodomain 55 107 IPR001356 GO:0003677
Bma06g00299 318 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-6-LIKE 3 308 - -
Bma06g00299 318 CDD homeodomain 54 110 IPR001356 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00299 K09338 HD-ZIP; homeobox-leucine zipper protein - qsu:112039557 342.043
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma06g00299 Bma08g00287 CCT
Bma06g00299 Bma15g01059 CCT
Bma06g00299 Bma08g00287 ECH
Bma03g01213 Bma06g00299 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00299 Bma-Chr6:4444601 Bma09g00105 Bma-Chr9:2910543 1.62E-91 dispersed
Bma14g01608 Bma-Chr14:33712885 Bma06g00299 Bma-Chr6:4444601 1.15E-38 dispersed
Bma14g01636 Bma-Chr14:34559003 Bma06g00299 Bma-Chr6:4444601 8.24E-39 dispersed
Bma15g01059 Bma-Chr15:42550266 Bma06g00299 Bma-Chr6:4444601 1.00E-80 wgd
Bma03g01213 Bma-Chr3:18907358 Bma06g00299 Bma-Chr6:4444601 3.33E-116 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi7g895 . Blo16g00302 . Bda10g00072 Bpe06g00086 Bpe15g00248 . Bma15g01059 Cmo03g00867 Cmo07g00563 . . . . . Cpe19g00748 . . . . . . . . Cla01g01817 Cam01g1903 Cec04g1557 Cco04g1619 Clacu01g1926 Cmu01g1803 Cre04g1476 Cone6ag1545 Cone9ag1462 . . Lsi01g00792 . . Cme08g00748 Blo05g00753 Blo06g00068 . . Bpe13g00171 . Bma03g01213 Bma06g00299 . . . Cma03g00821 Cma07g00559 Car03g00752 Car07g00496 Cpe10g00547 . . . . . . . . . . . . . . . . . Chy02g00736 .
Vvi17g2 . Blo16g00315 . Bda15g00749 . . Bma06g00299 . . . Cma10g00005 . Car10g00003 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe15g00240 . Bma08g00287 . Cmo10g00003 . . . . . . Cpe18g00946 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001406 3 3 3 4 3 2 4 2 2 1 2 2 4 1 2 4 2 2 4 2 1 2 2 2 2 2 2 3 4 2 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57438 PF00046 Homeodomain 1.20E-15 CL0123 Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g00299 Bma_Chr06 FPKM 0.0 0.0 0.164041 0.0 0.0 0.0 0.111053 0.0 0.0 0.0