Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00315 ATGGCGGAATCTGTAGAAATGAATCTACCCAGCAAGGCATTTGGCTGGGCTGCGAGAGACACTTCTGGTGTTCTCTCTCCTTTCCATTTCTCGAGAAGAGCAACGGGAGAGAAGGATGTCAAATTTAAGGTGCTTTACTGTGGGGTGTGTCATTCCGACTTTCACATGGCCAAGAACGATTGGGGAATATCTACATATCCTGTCGTACCAGGACATGAGGTCGTAGGTATAGTGACAGAGGTTGGCAACAAAGTACAGAAGTTTAAGGTCGGAGACAGAGTGGGGGTGGGATGCTATGTCGGATCGTGCCGCTCGTGCGACGATTGTTCGAACAACCTCGAAAATTACTGCCAAAAAGCGATGTTCACCTACGCATCCAAATACTTCGACGGCACCACCACATACGGAGGTTACTCCGACCACATGGTGACCGATGAACAGTTTGTCGTTCGCATTCCGGACAGCCTCCCACTGGATGCTTCTGCGCCGTTGTTATGTGCTGGCATCACTGTTTACAGCCCGTTGAGGTATTACGGGCTCGATAAGCCTGGATTGCGGGTTGGTGTTGTAGGCCTCGGCGGCGTCGGCCATGTCGCCGTAAAATTTGCCAAGGCGTTCGGCGCTAAGGTCACAGTGATTAGCACATCAGCTAATAAAAAGGAGGAGGCTCTTCAACGTCTTGGTGCTGACTCCTTTTTGATAAGCCATAATCAAGAAGAATTACAGGCCGCCATGGGCACGTTTGATGGTATCCTCGACACTGTCTCTGCAGTTCATTCTCTTCTTCCTCTACTCGGACTTTTGAAATCACATGGAAAACTTATTTTGCTGGGAATACCAGATAAGCCTTTTGAACTTCCGTCGTTTCCCCTCGCTATCGGCAGGAAAATGGTGGCCGGAAGTGCCGCCGGGGGTCTGAAGGAGACCCAAGAAATGATAGATTTTGCGGCAAAACACAACATAACGGCGGACATCGAGGTTATCCCGATTGACTACGTGAATACAGCCGTGGAGAGGCTTCTGAAAGCAGATGTCAAATATCGATTCGTTATCGATGTTGGCAACACCTTGGGTTGA 1077 49.49 MAESVEMNLPSKAFGWAARDTSGVLSPFHFSRRATGEKDVKFKVLYCGVCHSDFHMAKNDWGISTYPVVPGHEVVGIVTEVGNKVQKFKVGDRVGVGCYVGSCRSCDDCSNNLENYCQKAMFTYASKYFDGTTTYGGYSDHMVTDEQFVVRIPDSLPLDASAPLLCAGITVYSPLRYYGLDKPGLRVGVVGLGGVGHVAVKFAKAFGAKVTVISTSANKKEEALQRLGADSFLISHNQEELQAAMGTFDGILDTVSAVHSLLPLLGLLKSHGKLILLGIPDKPFELPSFPLAIGRKMVAGSAAGGLKETQEMIDFAAKHNITADIEVIPIDYVNTAVERLLKADVKYRFVIDVGNTLG 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5280906 5287985 - Bma022969.1 Bma06g00315 83817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00315 358 Gene3D - 16 353 - -
Bma06g00315 358 CDD CAD1 14 352 - -
Bma06g00315 358 Pfam Zinc-binding dehydrogenase 194 317 IPR013149 -
Bma06g00315 358 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 71 85 IPR002328 GO:0008270|GO:0016491
Bma06g00315 358 PANTHER ALDEHYDE REDUCTASE 6 357 - -
Bma06g00315 358 Pfam Alcohol dehydrogenase GroES-like domain 38 151 IPR013154 -
Bma06g00315 358 PANTHER LOW QUALITY PROTEIN: 8-HYDROXYGERANIOL DEHYDROGENASE-LIKE 6 357 - -
Bma06g00315 358 SUPERFAMILY GroES-like 20 184 IPR011032 -
Bma06g00315 358 Gene3D - 167 323 - -
Bma06g00315 358 SMART PKS_ER_names_mod 23 351 IPR020843 GO:0016491
Bma06g00315 358 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 156 321 IPR036291 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00315 Bma-Chr6:5280906 Bma06g00531 Bma-Chr6:27263080 1.45E-161 dispersed
Bma01g00875 Bma-Chr1:8226135 Bma06g00315 Bma-Chr6:5280906 5.37E-12 transposed
Bma06g00655 Bma-Chr6:35204886 Bma06g00315 Bma-Chr6:5280906 0 transposed
Bma07g01033 Bma-Chr7:41786114 Bma06g00315 Bma-Chr6:5280906 2.37E-11 transposed
Bma15g01079 Bma-Chr15:43134402 Bma06g00315 Bma-Chr6:5280906 6.92E-76 wgd
Bma03g01194 Bma-Chr3:17950504 Bma06g00315 Bma-Chr6:5280906 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00315 - - qsu:112006220 562.762